Hb_003050_280

Information

Type transcription factor
Description TF Family: HMG
Location Contig3050: 223945-228100
Sequence    

Annotation

kegg
ID rcu:RCOM_0633310
description DNA-binding protein MNB1B, putative
nr
ID XP_002519708.1
description DNA-binding protein MNB1B, putative [Ricinus communis]
swissprot
ID O64702
description High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14 PE=2 SV=2
trembl
ID B9S139
description DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0633310 PE=4 SV=1
Gene Ontology
ID GO:0003677
description high mobility group b protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32159: 223995-228094 , PASA_asmbl_32160: 226751-227130 , PASA_asmbl_32162: 224053-228053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_280 0.0 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
2 Hb_000318_160 0.0599569344 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
3 Hb_004125_040 0.0721204549 - - -
4 Hb_003349_080 0.0755087263 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
5 Hb_000224_140 0.078879372 - - ribonuclease z, chloroplast, putative [Ricinus communis]
6 Hb_002872_050 0.0873925456 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
7 Hb_007576_170 0.0918707627 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004459_040 0.0921876106 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
9 Hb_033153_060 0.0936859438 - - Transcription elongation factor, putative [Ricinus communis]
10 Hb_000125_210 0.0956587832 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
11 Hb_004846_090 0.0969088994 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
12 Hb_003880_030 0.0970012201 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
13 Hb_001512_080 0.0994698278 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
14 Hb_001329_150 0.0996066173 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
15 Hb_000056_070 0.099997644 - - -
16 Hb_000431_070 0.1009236246 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
17 Hb_000840_180 0.1019954374 - - protein BOLA2 [Jatropha curcas]
18 Hb_000169_040 0.1023640332 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
19 Hb_000962_040 0.1033512064 - - heat shock protein binding protein, putative [Ricinus communis]
20 Hb_003849_150 0.1038973945 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_280 Hb_003050_280 Hb_000318_160 Hb_000318_160 Hb_003050_280--Hb_000318_160 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003349_080 Hb_003349_080 Hb_003050_280--Hb_003349_080 Hb_000224_140 Hb_000224_140 Hb_003050_280--Hb_000224_140 Hb_002872_050 Hb_002872_050 Hb_003050_280--Hb_002872_050 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170 Hb_000318_160--Hb_003349_080 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000928_130 Hb_000928_130 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490 Hb_003050_250 Hb_003050_250 Hb_004125_040--Hb_003050_250 Hb_001491_010 Hb_001491_010 Hb_004125_040--Hb_001491_010 Hb_021576_030 Hb_021576_030 Hb_004125_040--Hb_021576_030 Hb_019113_020 Hb_019113_020 Hb_004125_040--Hb_019113_020 Hb_004125_040--Hb_007576_170 Hb_003349_080--Hb_000224_140 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_002918_290 Hb_002918_290 Hb_003349_080--Hb_002918_290 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140 Hb_007827_010 Hb_007827_010 Hb_002872_050--Hb_007827_010 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_004459_040 Hb_004459_040 Hb_007576_170--Hb_004459_040 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_033153_060 Hb_033153_060 Hb_007576_170--Hb_033153_060 Hb_006541_010 Hb_006541_010 Hb_007576_170--Hb_006541_010 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9483 10.9643 33.5653 27.3505 16.0496 25.266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.0465 110.476 56.0362 26.6278 56.5443

CAGE analysis