Hb_003050_330

Information

Type -
Description -
Location Contig3050: 250189-250744
Sequence    

Annotation

kegg
ID pop:POPTR_0004s13610g
description hypothetical protein
nr
ID KDP37948.1
description hypothetical protein JCGZ_04591 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04591 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_H12.ab1: 250455-250894 , 020_O19.ab1: 250455-250894 , 053_K03.ab1: 250455-250894

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_330 0.0 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
2 Hb_003494_150 0.0774642322 - - Silicon transporter, putative [Ricinus communis]
3 Hb_003008_020 0.0792005946 - - auxin-responsive family protein [Populus trichocarpa]
4 Hb_032202_010 0.0839784147 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
5 Hb_008689_010 0.0841513046 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
6 Hb_002193_080 0.086040224 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
7 Hb_007666_010 0.0931137886 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
8 Hb_001158_250 0.0935701023 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002785_010 0.0967449121 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
10 Hb_000201_010 0.1056515321 - - unnamed protein product [Vitis vinifera]
11 Hb_000752_040 0.1068155939 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
12 Hb_000120_480 0.1099811421 - - -
13 Hb_000369_040 0.1105266348 - - Ankyrin repeat family protein, putative [Theobroma cacao]
14 Hb_005211_210 0.1118222445 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
15 Hb_001242_040 0.1203578087 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
16 Hb_000271_130 0.1229516265 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
17 Hb_005790_010 0.1257362549 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
18 Hb_005051_010 0.125895857 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
19 Hb_000622_030 0.1266407316 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
20 Hb_014700_030 0.1285696715 - - tryptophan synthase beta chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_003050_330 Hb_003050_330 Hb_003494_150 Hb_003494_150 Hb_003050_330--Hb_003494_150 Hb_003008_020 Hb_003008_020 Hb_003050_330--Hb_003008_020 Hb_032202_010 Hb_032202_010 Hb_003050_330--Hb_032202_010 Hb_008689_010 Hb_008689_010 Hb_003050_330--Hb_008689_010 Hb_002193_080 Hb_002193_080 Hb_003050_330--Hb_002193_080 Hb_007666_010 Hb_007666_010 Hb_003050_330--Hb_007666_010 Hb_003494_150--Hb_007666_010 Hb_003494_150--Hb_032202_010 Hb_003494_150--Hb_002193_080 Hb_003494_150--Hb_003008_020 Hb_003494_150--Hb_008689_010 Hb_003008_020--Hb_008689_010 Hb_036790_110 Hb_036790_110 Hb_003008_020--Hb_036790_110 Hb_077774_010 Hb_077774_010 Hb_003008_020--Hb_077774_010 Hb_003008_020--Hb_002193_080 Hb_000752_040 Hb_000752_040 Hb_003008_020--Hb_000752_040 Hb_032202_010--Hb_000752_040 Hb_002785_010 Hb_002785_010 Hb_032202_010--Hb_002785_010 Hb_032202_010--Hb_007666_010 Hb_000369_040 Hb_000369_040 Hb_032202_010--Hb_000369_040 Hb_008689_010--Hb_002193_080 Hb_005211_210 Hb_005211_210 Hb_008689_010--Hb_005211_210 Hb_005675_070 Hb_005675_070 Hb_008689_010--Hb_005675_070 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040 Hb_002193_080--Hb_005211_210 Hb_000201_010 Hb_000201_010 Hb_002193_080--Hb_000201_010 Hb_002193_080--Hb_005675_070 Hb_007666_010--Hb_000752_040 Hb_000347_320 Hb_000347_320 Hb_007666_010--Hb_000347_320 Hb_007666_010--Hb_000369_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.53509 3.16635 7.74738 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.152738 10.8691

CAGE analysis