Hb_003050_390

Information

Type -
Description -
Location Contig3050: 346352-350211
Sequence    

Annotation

kegg
ID egr:104442543
description uncharacterized LOC104442543
nr
ID XP_010054264.1
description PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID W9RTH8
description Uncharacterized protein OS=Morus notabilis GN=L484_002862 PE=4 SV=1
Gene Ontology
ID GO:0046983
description PREDICTED: uncharacterized protein LOC104442543

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32170: 346439-350183
cDNA
(Sanger)
(ID:Location)		 008_H10.ab1: 347698-350183

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_390 0.0 - - PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
2 Hb_000270_510 0.0976367526 - - hypothetical protein CISIN_1g008173mg [Citrus sinensis]
3 Hb_000080_150 0.1002978493 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
4 Hb_000270_520 0.1014698249 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
5 Hb_001135_130 0.1017701857 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
6 Hb_003528_010 0.1061302145 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
7 Hb_004204_170 0.1072269416 - - synaptosomal associated protein, putative [Ricinus communis]
8 Hb_000373_150 0.1087796407 - - PREDICTED: protein FAM188A [Jatropha curcas]
9 Hb_000205_300 0.109874239 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
10 Hb_003455_020 0.1104470562 - - PREDICTED: transportin-1 [Jatropha curcas]
11 Hb_005051_020 0.1109707337 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
12 Hb_002111_070 0.1114284398 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
13 Hb_003640_040 0.1117194736 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
14 Hb_001617_050 0.1140032552 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
15 Hb_001766_080 0.1147587673 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
16 Hb_000230_120 0.11545752 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
17 Hb_000031_150 0.1175258695 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
18 Hb_000856_190 0.1179729117 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
19 Hb_034506_010 0.1205812826 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
20 Hb_003082_010 0.1226036588 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_390 Hb_003050_390 Hb_000270_510 Hb_000270_510 Hb_003050_390--Hb_000270_510 Hb_000080_150 Hb_000080_150 Hb_003050_390--Hb_000080_150 Hb_000270_520 Hb_000270_520 Hb_003050_390--Hb_000270_520 Hb_001135_130 Hb_001135_130 Hb_003050_390--Hb_001135_130 Hb_003528_010 Hb_003528_010 Hb_003050_390--Hb_003528_010 Hb_004204_170 Hb_004204_170 Hb_003050_390--Hb_004204_170 Hb_000270_510--Hb_003528_010 Hb_004324_400 Hb_004324_400 Hb_000270_510--Hb_004324_400 Hb_000270_510--Hb_000270_520 Hb_000270_510--Hb_001135_130 Hb_000035_200 Hb_000035_200 Hb_000270_510--Hb_000035_200 Hb_001377_270 Hb_001377_270 Hb_000080_150--Hb_001377_270 Hb_000366_120 Hb_000366_120 Hb_000080_150--Hb_000366_120 Hb_002111_070 Hb_002111_070 Hb_000080_150--Hb_002111_070 Hb_003640_040 Hb_003640_040 Hb_000080_150--Hb_003640_040 Hb_004195_200 Hb_004195_200 Hb_000080_150--Hb_004195_200 Hb_001248_060 Hb_001248_060 Hb_000080_150--Hb_001248_060 Hb_142218_020 Hb_142218_020 Hb_000270_520--Hb_142218_020 Hb_005137_040 Hb_005137_040 Hb_000270_520--Hb_005137_040 Hb_000703_150 Hb_000703_150 Hb_000270_520--Hb_000703_150 Hb_000270_520--Hb_000035_200 Hb_004310_020 Hb_004310_020 Hb_001135_130--Hb_004310_020 Hb_000982_060 Hb_000982_060 Hb_001135_130--Hb_000982_060 Hb_000442_150 Hb_000442_150 Hb_001135_130--Hb_000442_150 Hb_000205_300 Hb_000205_300 Hb_001135_130--Hb_000205_300 Hb_002235_210 Hb_002235_210 Hb_001135_130--Hb_002235_210 Hb_057878_010 Hb_057878_010 Hb_001135_130--Hb_057878_010 Hb_032920_060 Hb_032920_060 Hb_003528_010--Hb_032920_060 Hb_000185_070 Hb_000185_070 Hb_003528_010--Hb_000185_070 Hb_003549_150 Hb_003549_150 Hb_003528_010--Hb_003549_150 Hb_010381_090 Hb_010381_090 Hb_003528_010--Hb_010381_090 Hb_006588_200 Hb_006588_200 Hb_003528_010--Hb_006588_200 Hb_003528_010--Hb_000205_300 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_000085_100 Hb_000085_100 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_001178_140 Hb_001178_140 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.3854 65.8587 44.6107 78.5877 66.1705 74.4552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.7993 46.5317 105.134 52.3853 17.94

CAGE analysis