Hb_003052_040

Information

Type -
Description -
Location Contig3052: 31542-33056
Sequence    

Annotation

kegg
ID rcu:RCOM_1465090
description hypothetical protein
nr
ID XP_002514545.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLC6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1465090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011671_400 0.1208257449 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
3 Hb_002260_090 0.1271070458 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
4 Hb_001396_190 0.127910068 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
5 Hb_005914_070 0.1472322187 - - conserved hypothetical protein [Ricinus communis]
6 Hb_078633_010 0.149815195 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
7 Hb_014497_110 0.1547690368 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
8 Hb_001213_120 0.161868618 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
9 Hb_005908_040 0.1626122927 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
10 Hb_000367_280 0.1642326652 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
11 Hb_000077_410 0.1658534066 - - protein with unknown function [Ricinus communis]
12 Hb_001276_060 0.1663325195 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
13 Hb_003095_070 0.1673748408 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
14 Hb_001268_080 0.167649185 - - catalytic, putative [Ricinus communis]
15 Hb_005000_160 0.1685343155 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
16 Hb_048937_030 0.1796474583 - - hypothetical protein RCOM_0231790 [Ricinus communis]
17 Hb_001102_250 0.1816024853 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
18 Hb_072912_020 0.182675326 - - abhydrolase domain containing, putative [Ricinus communis]
19 Hb_005137_020 0.1833769897 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
20 Hb_008066_040 0.1838486556 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]

Gene co-expression network

sample Hb_003052_040 Hb_003052_040 Hb_011671_400 Hb_011671_400 Hb_003052_040--Hb_011671_400 Hb_002260_090 Hb_002260_090 Hb_003052_040--Hb_002260_090 Hb_001396_190 Hb_001396_190 Hb_003052_040--Hb_001396_190 Hb_005914_070 Hb_005914_070 Hb_003052_040--Hb_005914_070 Hb_078633_010 Hb_078633_010 Hb_003052_040--Hb_078633_010 Hb_014497_110 Hb_014497_110 Hb_003052_040--Hb_014497_110 Hb_001276_060 Hb_001276_060 Hb_011671_400--Hb_001276_060 Hb_011671_400--Hb_078633_010 Hb_011671_400--Hb_002260_090 Hb_003095_070 Hb_003095_070 Hb_011671_400--Hb_003095_070 Hb_005000_160 Hb_005000_160 Hb_011671_400--Hb_005000_160 Hb_002260_090--Hb_014497_110 Hb_001213_120 Hb_001213_120 Hb_002260_090--Hb_001213_120 Hb_012366_020 Hb_012366_020 Hb_002260_090--Hb_012366_020 Hb_005908_040 Hb_005908_040 Hb_002260_090--Hb_005908_040 Hb_000367_280 Hb_000367_280 Hb_001396_190--Hb_000367_280 Hb_168501_010 Hb_168501_010 Hb_001396_190--Hb_168501_010 Hb_001268_080 Hb_001268_080 Hb_001396_190--Hb_001268_080 Hb_001396_190--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_001396_190--Hb_008066_040 Hb_091433_040 Hb_091433_040 Hb_005914_070--Hb_091433_040 Hb_000227_200 Hb_000227_200 Hb_005914_070--Hb_000227_200 Hb_113906_010 Hb_113906_010 Hb_005914_070--Hb_113906_010 Hb_000111_010 Hb_000111_010 Hb_005914_070--Hb_000111_010 Hb_001369_450 Hb_001369_450 Hb_005914_070--Hb_001369_450 Hb_078633_010--Hb_001268_080 Hb_072912_020 Hb_072912_020 Hb_078633_010--Hb_072912_020 Hb_005137_020 Hb_005137_020 Hb_078633_010--Hb_005137_020 Hb_078633_010--Hb_001213_120 Hb_078633_010--Hb_000367_280 Hb_000544_110 Hb_000544_110 Hb_078633_010--Hb_000544_110 Hb_014497_110--Hb_001213_120 Hb_014497_110--Hb_012366_020 Hb_001012_040 Hb_001012_040 Hb_014497_110--Hb_001012_040 Hb_002983_030 Hb_002983_030 Hb_014497_110--Hb_002983_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65434 0.207975 0 0.249927 0.300505 0.79405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.30153 6.46973 7.10963 0.199766 0

CAGE analysis