Hb_003052_060

Information

Type -
Description -
Location Contig3052: 48403-49125
Sequence    

Annotation

kegg
ID tcc:TCM_011381
description hypothetical protein
nr
ID XP_012080499.1
description PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32178: 42220-47811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_060 0.0 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
2 Hb_011214_050 0.1396997735 - - phytoene synthase 2 [Manihot esculenta]
3 Hb_001360_070 0.1744865699 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027654_060 0.1886423135 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
5 Hb_004846_090 0.1890941342 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
6 Hb_002784_120 0.1900599707 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
7 Hb_000853_190 0.1905314356 - - mitochondrial carrier protein, putative [Ricinus communis]
8 Hb_028486_030 0.1919013287 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
9 Hb_018133_020 0.1945568881 - - transporter, putative [Ricinus communis]
10 Hb_001427_200 0.1946708553 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
11 Hb_007416_050 0.195252381 transcription factor TF Family: Orphans PREDICTED: histidine kinase 5 [Jatropha curcas]
12 Hb_006198_070 0.1958162194 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
13 Hb_012114_070 0.1960763746 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
14 Hb_003038_240 0.1973044598 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011671_390 0.1988164944 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
16 Hb_003683_120 0.1991269895 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001040_110 0.1995198854 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
18 Hb_004057_010 0.2011961316 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
19 Hb_002235_350 0.2022102436 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
20 Hb_000614_220 0.2029920014 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]

Gene co-expression network

sample Hb_003052_060 Hb_003052_060 Hb_011214_050 Hb_011214_050 Hb_003052_060--Hb_011214_050 Hb_001360_070 Hb_001360_070 Hb_003052_060--Hb_001360_070 Hb_027654_060 Hb_027654_060 Hb_003052_060--Hb_027654_060 Hb_004846_090 Hb_004846_090 Hb_003052_060--Hb_004846_090 Hb_002784_120 Hb_002784_120 Hb_003052_060--Hb_002784_120 Hb_000853_190 Hb_000853_190 Hb_003052_060--Hb_000853_190 Hb_001427_200 Hb_001427_200 Hb_011214_050--Hb_001427_200 Hb_005834_020 Hb_005834_020 Hb_011214_050--Hb_005834_020 Hb_001322_110 Hb_001322_110 Hb_011214_050--Hb_001322_110 Hb_001811_160 Hb_001811_160 Hb_011214_050--Hb_001811_160 Hb_000185_210 Hb_000185_210 Hb_011214_050--Hb_000185_210 Hb_000453_120 Hb_000453_120 Hb_001360_070--Hb_000453_120 Hb_000265_050 Hb_000265_050 Hb_001360_070--Hb_000265_050 Hb_005063_050 Hb_005063_050 Hb_001360_070--Hb_005063_050 Hb_007416_030 Hb_007416_030 Hb_001360_070--Hb_007416_030 Hb_003994_250 Hb_003994_250 Hb_001360_070--Hb_003994_250 Hb_000453_090 Hb_000453_090 Hb_001360_070--Hb_000453_090 Hb_000614_220 Hb_000614_220 Hb_027654_060--Hb_000614_220 Hb_082609_010 Hb_082609_010 Hb_027654_060--Hb_082609_010 Hb_002799_110 Hb_002799_110 Hb_027654_060--Hb_002799_110 Hb_000962_040 Hb_000962_040 Hb_027654_060--Hb_000962_040 Hb_003020_220 Hb_003020_220 Hb_027654_060--Hb_003020_220 Hb_028486_030 Hb_028486_030 Hb_027654_060--Hb_028486_030 Hb_004846_090--Hb_000453_090 Hb_011671_390 Hb_011671_390 Hb_004846_090--Hb_011671_390 Hb_004459_040 Hb_004459_040 Hb_004846_090--Hb_004459_040 Hb_001780_040 Hb_001780_040 Hb_004846_090--Hb_001780_040 Hb_000840_180 Hb_000840_180 Hb_004846_090--Hb_000840_180 Hb_004846_090--Hb_028486_030 Hb_012505_010 Hb_012505_010 Hb_002784_120--Hb_012505_010 Hb_000302_220 Hb_000302_220 Hb_002784_120--Hb_000302_220 Hb_001545_100 Hb_001545_100 Hb_002784_120--Hb_001545_100 Hb_138585_060 Hb_138585_060 Hb_002784_120--Hb_138585_060 Hb_000975_300 Hb_000975_300 Hb_002784_120--Hb_000975_300 Hb_000127_110 Hb_000127_110 Hb_002784_120--Hb_000127_110 Hb_000436_130 Hb_000436_130 Hb_000853_190--Hb_000436_130 Hb_011512_040 Hb_011512_040 Hb_000853_190--Hb_011512_040 Hb_000853_190--Hb_000962_040 Hb_000853_190--Hb_000614_220 Hb_000853_190--Hb_027654_060 Hb_002871_190 Hb_002871_190 Hb_000853_190--Hb_002871_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.288743 0.0845468 0.351378 0.116756 0.243104 0.081254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231172 0.908233 0.469813 0.0374657 0.519219

CAGE analysis