Hb_003052_080

Information

Type desease resistance
Description Gene Name: PRK
Location Contig3052: 59681-66116
Sequence    

Annotation

kegg
ID rcu:RCOM_1464850
description uridine cytidine kinase I, putative (EC:2.7.1.48)
nr
ID XP_012080500.1
description PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
swissprot
ID Q54R62
description Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1
trembl
ID B9RLC2
description Uridine kinase OS=Ricinus communis GN=RCOM_1464850 PE=3 SV=1
Gene Ontology
ID GO:0004849
description uridine-cytidine kinase c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32181: 59831-60088 , PASA_asmbl_32182: 60132-62149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_080 0.0 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
2 Hb_004957_050 0.1049632372 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
3 Hb_002495_030 0.1126641233 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
4 Hb_000309_070 0.1245948699 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
5 Hb_001404_070 0.1306680393 - - sucrose synthase 4 [Hevea brasiliensis]
6 Hb_007590_100 0.1311006087 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
7 Hb_002750_040 0.132050506 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
8 Hb_000417_400 0.132222935 - - PREDICTED: ubiquitin domain-containing protein 1-like isoform X1 [Jatropha curcas]
9 Hb_113766_010 0.1357254204 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
10 Hb_002374_510 0.1379939096 - - Esterase precursor, putative [Ricinus communis]
11 Hb_004032_110 0.1388440159 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
12 Hb_002284_060 0.1412811864 - - sugar transporter, putative [Ricinus communis]
13 Hb_000103_300 0.1429839573 - - PREDICTED: perakine reductase-like [Jatropha curcas]
14 Hb_002073_170 0.1437881496 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
15 Hb_000152_570 0.1469294959 - - 21 kDa protein precursor, putative [Ricinus communis]
16 Hb_009122_010 0.1503615556 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_002391_240 0.1527224928 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006992_010 0.1531221022 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_007370_010 0.1535429795 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
20 Hb_000580_110 0.1543669707 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003052_080 Hb_003052_080 Hb_004957_050 Hb_004957_050 Hb_003052_080--Hb_004957_050 Hb_002495_030 Hb_002495_030 Hb_003052_080--Hb_002495_030 Hb_000309_070 Hb_000309_070 Hb_003052_080--Hb_000309_070 Hb_001404_070 Hb_001404_070 Hb_003052_080--Hb_001404_070 Hb_007590_100 Hb_007590_100 Hb_003052_080--Hb_007590_100 Hb_002750_040 Hb_002750_040 Hb_003052_080--Hb_002750_040 Hb_000392_540 Hb_000392_540 Hb_004957_050--Hb_000392_540 Hb_002374_510 Hb_002374_510 Hb_004957_050--Hb_002374_510 Hb_113766_010 Hb_113766_010 Hb_004957_050--Hb_113766_010 Hb_014361_010 Hb_014361_010 Hb_004957_050--Hb_014361_010 Hb_001008_080 Hb_001008_080 Hb_004957_050--Hb_001008_080 Hb_098795_030 Hb_098795_030 Hb_002495_030--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_002495_030--Hb_006615_230 Hb_000580_110 Hb_000580_110 Hb_002495_030--Hb_000580_110 Hb_002495_030--Hb_001008_080 Hb_002495_030--Hb_007590_100 Hb_000392_490 Hb_000392_490 Hb_000309_070--Hb_000392_490 Hb_000963_120 Hb_000963_120 Hb_000309_070--Hb_000963_120 Hb_004374_030 Hb_004374_030 Hb_000309_070--Hb_004374_030 Hb_002119_110 Hb_002119_110 Hb_000309_070--Hb_002119_110 Hb_006992_010 Hb_006992_010 Hb_000309_070--Hb_006992_010 Hb_000309_070--Hb_002374_510 Hb_000959_130 Hb_000959_130 Hb_001404_070--Hb_000959_130 Hb_001404_070--Hb_002750_040 Hb_005545_110 Hb_005545_110 Hb_001404_070--Hb_005545_110 Hb_009456_010 Hb_009456_010 Hb_001404_070--Hb_009456_010 Hb_141194_020 Hb_141194_020 Hb_001404_070--Hb_141194_020 Hb_004667_030 Hb_004667_030 Hb_001404_070--Hb_004667_030 Hb_007590_100--Hb_006615_230 Hb_187959_010 Hb_187959_010 Hb_007590_100--Hb_187959_010 Hb_004032_110 Hb_004032_110 Hb_007590_100--Hb_004032_110 Hb_007590_100--Hb_098795_030 Hb_026198_020 Hb_026198_020 Hb_002750_040--Hb_026198_020 Hb_002750_040--Hb_113766_010 Hb_009122_010 Hb_009122_010 Hb_002750_040--Hb_009122_010 Hb_002391_240 Hb_002391_240 Hb_002750_040--Hb_002391_240 Hb_001269_580 Hb_001269_580 Hb_002750_040--Hb_001269_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.482862 1.23268 4.55962 0.0652292 0.00761813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118689 0.0933918 0.177633 1.43515 3.46535

CAGE analysis