Hb_003052_100

Information

Type -
Description -
Location Contig3052: 83137-96346
Sequence    

Annotation

kegg
ID rcu:RCOM_1464810
description ubiquitin-protein ligase, putative
nr
ID XP_002514537.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9FZ70
description F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1
trembl
ID B9RLB8
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1464810 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box fbd lrr-repeat protein at1g13570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32183: 92840-93092 , PASA_asmbl_32184: 93257-93373 , PASA_asmbl_32186: 94011-96282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_100 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_158092_070 0.0560660547 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
3 Hb_001195_690 0.065282031 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
4 Hb_002078_450 0.0718300545 - - nuclear transport factor, putative [Ricinus communis]
5 Hb_004657_020 0.0736858355 - - rer1 protein, putative [Ricinus communis]
6 Hb_071736_020 0.0746461726 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
7 Hb_001671_080 0.0796000658 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_004221_010 0.0813214928 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
9 Hb_003086_020 0.0815634279 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
10 Hb_000975_290 0.0816870267 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
11 Hb_002411_200 0.082885315 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007919_050 0.0833227362 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
13 Hb_133271_020 0.0861088665 - - prohibitin, putative [Ricinus communis]
14 Hb_022250_040 0.0861380928 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
15 Hb_002686_270 0.0861902517 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002681_020 0.0877533816 - - aldose 1-epimerase, putative [Ricinus communis]
17 Hb_002235_400 0.0877725008 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
18 Hb_000086_570 0.0882993895 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
19 Hb_005686_110 0.0892607495 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
20 Hb_009711_030 0.0909397152 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003052_100 Hb_003052_100 Hb_158092_070 Hb_158092_070 Hb_003052_100--Hb_158092_070 Hb_001195_690 Hb_001195_690 Hb_003052_100--Hb_001195_690 Hb_002078_450 Hb_002078_450 Hb_003052_100--Hb_002078_450 Hb_004657_020 Hb_004657_020 Hb_003052_100--Hb_004657_020 Hb_071736_020 Hb_071736_020 Hb_003052_100--Hb_071736_020 Hb_001671_080 Hb_001671_080 Hb_003052_100--Hb_001671_080 Hb_133271_020 Hb_133271_020 Hb_158092_070--Hb_133271_020 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290 Hb_004324_310 Hb_004324_310 Hb_001195_690--Hb_004324_310 Hb_003994_180 Hb_003994_180 Hb_001195_690--Hb_003994_180 Hb_001195_690--Hb_158092_070 Hb_021254_030 Hb_021254_030 Hb_001195_690--Hb_021254_030 Hb_001195_690--Hb_004657_020 Hb_002078_450--Hb_071736_020 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_000086_570 Hb_000086_570 Hb_002078_450--Hb_000086_570 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_001718_100 Hb_001718_100 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040 Hb_004657_020--Hb_002078_450 Hb_000371_080 Hb_000371_080 Hb_004657_020--Hb_000371_080 Hb_004657_020--Hb_009711_030 Hb_004657_020--Hb_005686_110 Hb_071736_020--Hb_001718_100 Hb_071736_020--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_071736_020--Hb_001427_120 Hb_071736_020--Hb_000975_290 Hb_021650_030 Hb_021650_030 Hb_071736_020--Hb_021650_030 Hb_004223_130 Hb_004223_130 Hb_001671_080--Hb_004223_130 Hb_001671_080--Hb_158092_070 Hb_001671_080--Hb_000975_290 Hb_007908_020 Hb_007908_020 Hb_001671_080--Hb_007908_020 Hb_001047_020 Hb_001047_020 Hb_001671_080--Hb_001047_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.21305 2.31063 0.934235 3.01477 4.98736 7.50894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7181 6.74954 7.20939 3.10594 0.903489

CAGE analysis