Hb_003052_120

Information

Type -
Description -
Location Contig3052: 97025-100923
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10970g
description POPTRDRAFT_820583; hypothetical protein
nr
ID XP_002311408.2
description hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
swissprot
ID Q8RY65
description Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1
trembl
ID B9HIT4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s10970g PE=3 SV=2
Gene Ontology
ID GO:0016021
description protein nsp-interacting kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_120 0.0 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
2 Hb_012807_060 0.0790572665 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_013914_020 0.0919115623 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_000586_100 0.0941139692 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009581_050 0.1019088284 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
6 Hb_000407_080 0.1028331492 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
7 Hb_002551_090 0.1112833205 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
8 Hb_003430_020 0.1163324051 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
9 Hb_008406_020 0.1175271223 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
10 Hb_003788_010 0.1212320681 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
11 Hb_003439_090 0.1237496038 - - kinase, putative [Ricinus communis]
12 Hb_111582_010 0.1270346873 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
13 Hb_000579_180 0.1274274966 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
14 Hb_003807_020 0.1287901008 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
15 Hb_003453_030 0.130598254 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
16 Hb_134017_010 0.1325438492 - - kinase, putative [Ricinus communis]
17 Hb_000934_290 0.1332329226 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002007_140 0.1333533321 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
19 Hb_008226_120 0.1335869518 - - ATP binding protein, putative [Ricinus communis]
20 Hb_004195_170 0.1347928587 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003052_120 Hb_003052_120 Hb_012807_060 Hb_012807_060 Hb_003052_120--Hb_012807_060 Hb_013914_020 Hb_013914_020 Hb_003052_120--Hb_013914_020 Hb_000586_100 Hb_000586_100 Hb_003052_120--Hb_000586_100 Hb_009581_050 Hb_009581_050 Hb_003052_120--Hb_009581_050 Hb_000407_080 Hb_000407_080 Hb_003052_120--Hb_000407_080 Hb_002551_090 Hb_002551_090 Hb_003052_120--Hb_002551_090 Hb_012807_060--Hb_009581_050 Hb_012807_060--Hb_002551_090 Hb_000579_180 Hb_000579_180 Hb_012807_060--Hb_000579_180 Hb_003430_020 Hb_003430_020 Hb_012807_060--Hb_003430_020 Hb_008226_120 Hb_008226_120 Hb_012807_060--Hb_008226_120 Hb_013914_020--Hb_000407_080 Hb_013914_020--Hb_000586_100 Hb_003439_090 Hb_003439_090 Hb_013914_020--Hb_003439_090 Hb_000045_180 Hb_000045_180 Hb_013914_020--Hb_000045_180 Hb_017866_020 Hb_017866_020 Hb_013914_020--Hb_017866_020 Hb_000586_100--Hb_003439_090 Hb_000586_100--Hb_000407_080 Hb_006020_010 Hb_006020_010 Hb_000586_100--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000586_100--Hb_006364_020 Hb_009581_050--Hb_000407_080 Hb_002007_140 Hb_002007_140 Hb_009581_050--Hb_002007_140 Hb_003807_020 Hb_003807_020 Hb_009581_050--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_009581_050--Hb_000335_050 Hb_009581_050--Hb_003430_020 Hb_134017_010 Hb_134017_010 Hb_000407_080--Hb_134017_010 Hb_000407_080--Hb_003439_090 Hb_000407_080--Hb_003807_020 Hb_001158_080 Hb_001158_080 Hb_002551_090--Hb_001158_080 Hb_000934_290 Hb_000934_290 Hb_002551_090--Hb_000934_290 Hb_008140_060 Hb_008140_060 Hb_002551_090--Hb_008140_060 Hb_022501_020 Hb_022501_020 Hb_002551_090--Hb_022501_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.368316 25.0407 3.74344 17.2362 0.868428 0.895904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0163415 0.0257183 0.0245496 32.1695 3.23044

CAGE analysis