Hb_003052_140

Information

Type -
Description -
Location Contig3052: 128458-131026
Sequence    

Annotation

kegg
ID rcu:RCOM_1464770
description s-adenosylmethionine decarboxylase, putative (EC:4.1.1.50)
nr
ID XP_002514534.1
description s-adenosylmethionine decarboxylase, putative [Ricinus communis]
swissprot
ID Q42679
description S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1
trembl
ID B9RLB5
description S-adenosylmethionine decarboxylase proenzyme OS=Ricinus communis GN=RCOM_1464770 PE=3 SV=1
Gene Ontology
ID GO:0004014
description s-adenosylmethionine decarboxylase proenzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32187: 128538-130961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_140 0.0 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
2 Hb_000336_250 0.0532562566 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
3 Hb_000125_170 0.0575311935 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
4 Hb_005675_040 0.0652137263 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
5 Hb_005016_160 0.0674044128 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
6 Hb_007416_180 0.0688403156 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
7 Hb_005541_010 0.0700125139 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
8 Hb_000334_220 0.0742653006 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
9 Hb_031527_020 0.0747075523 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
10 Hb_001005_190 0.0769612781 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
11 Hb_036790_100 0.0773698195 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
12 Hb_000181_070 0.0777989381 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002256_030 0.0797764942 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011491_010 0.0801461466 - - Protein YME1, putative [Ricinus communis]
15 Hb_003609_030 0.0805319005 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
16 Hb_045793_010 0.0825780096 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
17 Hb_001946_040 0.082843972 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001252_010 0.0831149841 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
19 Hb_003581_070 0.0841308621 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
20 Hb_000538_270 0.0844839969 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]

Gene co-expression network

sample Hb_003052_140 Hb_003052_140 Hb_000336_250 Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_000125_170 Hb_000125_170 Hb_003052_140--Hb_000125_170 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_005541_010 Hb_005541_010 Hb_003052_140--Hb_005541_010 Hb_003609_030 Hb_003609_030 Hb_000336_250--Hb_003609_030 Hb_031527_020 Hb_031527_020 Hb_000336_250--Hb_031527_020 Hb_001946_040 Hb_001946_040 Hb_000336_250--Hb_001946_040 Hb_000479_220 Hb_000479_220 Hb_000336_250--Hb_000479_220 Hb_000336_250--Hb_007416_180 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_031527_040 Hb_031527_040 Hb_000125_170--Hb_031527_040 Hb_000373_150 Hb_000373_150 Hb_000125_170--Hb_000373_150 Hb_000125_170--Hb_007416_180 Hb_003464_050 Hb_003464_050 Hb_000125_170--Hb_003464_050 Hb_005675_040--Hb_000125_170 Hb_140506_010 Hb_140506_010 Hb_005675_040--Hb_140506_010 Hb_002411_030 Hb_002411_030 Hb_005675_040--Hb_002411_030 Hb_005675_040--Hb_005541_010 Hb_004767_050 Hb_004767_050 Hb_005675_040--Hb_004767_050 Hb_005016_160--Hb_005541_010 Hb_000334_220 Hb_000334_220 Hb_005016_160--Hb_000334_220 Hb_012055_060 Hb_012055_060 Hb_005016_160--Hb_012055_060 Hb_012564_030 Hb_012564_030 Hb_005016_160--Hb_012564_030 Hb_005016_160--Hb_000336_250 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_007416_180--Hb_031527_040 Hb_004684_010 Hb_004684_010 Hb_007416_180--Hb_004684_010 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020 Hb_005541_010--Hb_140506_010 Hb_005541_010--Hb_000334_220 Hb_005541_010--Hb_012564_030 Hb_005541_010--Hb_002411_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.129 111.492 46.9116 55.3379 85.159 80.6652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.7281 87.5211 84.7937 42.4077 38.922

CAGE analysis