Hb_003052_150

Information

Type -
Description -
Location Contig3052: 133837-141925
Sequence    

Annotation

kegg
ID rcu:RCOM_1620390
description ATP-dependent RNA helicase, putative (EC:3.4.22.44)
nr
ID XP_012067796.1
description PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
swissprot
ID Q14562
description ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
trembl
ID A0A067KYU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15724 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32190: 134787-135408 , PASA_asmbl_32191: 140059-141849 , PASA_asmbl_32192: 140534-141762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_150 0.0 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
2 Hb_009627_010 0.0694939602 - - Protein dom-3, putative [Ricinus communis]
3 Hb_010381_060 0.0752874195 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
4 Hb_028487_110 0.0764900782 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
5 Hb_003544_100 0.0805851676 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
6 Hb_009411_010 0.0806154382 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
7 Hb_001638_250 0.0827263831 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
8 Hb_000041_280 0.0831991789 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
9 Hb_003952_150 0.0836845339 - - PREDICTED: cactin [Jatropha curcas]
10 Hb_000046_440 0.0840010509 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
11 Hb_000033_030 0.0861315349 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
12 Hb_007108_030 0.087019755 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000429_120 0.0872576589 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
14 Hb_000179_020 0.0873310296 - - amidase, putative [Ricinus communis]
15 Hb_005977_090 0.0875067047 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
16 Hb_000920_210 0.0881536857 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
17 Hb_000029_130 0.0881583342 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
18 Hb_001866_110 0.0881709654 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
19 Hb_126643_010 0.0886310541 - - Protein transport protein Sec24C, putative [Ricinus communis]
20 Hb_002909_050 0.0889469281 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003052_150 Hb_003052_150 Hb_009627_010 Hb_009627_010 Hb_003052_150--Hb_009627_010 Hb_010381_060 Hb_010381_060 Hb_003052_150--Hb_010381_060 Hb_028487_110 Hb_028487_110 Hb_003052_150--Hb_028487_110 Hb_003544_100 Hb_003544_100 Hb_003052_150--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_003052_150--Hb_009411_010 Hb_001638_250 Hb_001638_250 Hb_003052_150--Hb_001638_250 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_005977_090 Hb_005977_090 Hb_028487_110--Hb_005977_090 Hb_028487_110--Hb_001638_250 Hb_009535_020 Hb_009535_020 Hb_028487_110--Hb_009535_020 Hb_000329_090 Hb_000329_090 Hb_028487_110--Hb_000329_090 Hb_000743_040 Hb_000743_040 Hb_028487_110--Hb_000743_040 Hb_000046_440 Hb_000046_440 Hb_028487_110--Hb_000046_440 Hb_003544_100--Hb_009411_010 Hb_003544_100--Hb_001599_030 Hb_003938_080 Hb_003938_080 Hb_003544_100--Hb_003938_080 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_001638_250--Hb_005977_090 Hb_004934_090 Hb_004934_090 Hb_001638_250--Hb_004934_090 Hb_001680_010 Hb_001680_010 Hb_001638_250--Hb_001680_010 Hb_000002_040 Hb_000002_040 Hb_001638_250--Hb_000002_040 Hb_001541_020 Hb_001541_020 Hb_001638_250--Hb_001541_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.91871 3.89622 2.74618 1.86762 8.79079 9.78327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.48732 2.9613 5.18806 5.49932 4.67934

CAGE analysis