Hb_003052_190

Information

Type -
Description -
Location Contig3052: 177784-181370
Sequence    

Annotation

kegg
ID rcu:RCOM_1464640
description hypothetical protein
nr
ID XP_012081983.1
description PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18244 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32197: 178606-181281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_190 0.0 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
2 Hb_003582_060 0.0618847934 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
3 Hb_003304_020 0.0639578473 - - Polyadenylate-binding protein RBP47C [Glycine soja]
4 Hb_001245_100 0.0655195838 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
5 Hb_001163_050 0.0701127217 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
6 Hb_000205_090 0.0710635939 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
7 Hb_000003_230 0.072959748 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
8 Hb_000614_160 0.0751922413 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
9 Hb_004058_030 0.0759174189 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
10 Hb_000667_070 0.0775533288 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_005496_140 0.0785638318 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000827_050 0.0803395438 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_000236_040 0.0804154076 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
14 Hb_000729_030 0.0813566298 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
15 Hb_011512_070 0.0814494734 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
16 Hb_000656_240 0.0822926501 - - proteasome subunit alpha type, putative [Ricinus communis]
17 Hb_004109_170 0.0825194719 - - PREDICTED: probable ribokinase [Jatropha curcas]
18 Hb_008554_060 0.0837510483 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
19 Hb_000917_060 0.08427779 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
20 Hb_000331_550 0.0843646538 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]

Gene co-expression network

sample Hb_003052_190 Hb_003052_190 Hb_003582_060 Hb_003582_060 Hb_003052_190--Hb_003582_060 Hb_003304_020 Hb_003304_020 Hb_003052_190--Hb_003304_020 Hb_001245_100 Hb_001245_100 Hb_003052_190--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_003052_190--Hb_001163_050 Hb_000205_090 Hb_000205_090 Hb_003052_190--Hb_000205_090 Hb_000003_230 Hb_000003_230 Hb_003052_190--Hb_000003_230 Hb_006615_240 Hb_006615_240 Hb_003582_060--Hb_006615_240 Hb_003582_060--Hb_000003_230 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_003304_020--Hb_000003_230 Hb_004058_030 Hb_004058_030 Hb_003304_020--Hb_004058_030 Hb_007676_080 Hb_007676_080 Hb_003304_020--Hb_007676_080 Hb_002681_100 Hb_002681_100 Hb_003304_020--Hb_002681_100 Hb_001766_060 Hb_001766_060 Hb_001245_100--Hb_001766_060 Hb_000667_070 Hb_000667_070 Hb_001245_100--Hb_000667_070 Hb_005846_040 Hb_005846_040 Hb_001245_100--Hb_005846_040 Hb_027380_050 Hb_027380_050 Hb_001245_100--Hb_027380_050 Hb_003151_040 Hb_003151_040 Hb_001245_100--Hb_003151_040 Hb_002046_180 Hb_002046_180 Hb_001245_100--Hb_002046_180 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_004109_170 Hb_004109_170 Hb_000205_090--Hb_004109_170 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_000003_230--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_000003_230--Hb_006615_240 Hb_000003_230--Hb_004058_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.26366 4.80213 7.90699 5.17026 4.50833 4.88799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.17397 11.5738 7.86522 5.5828 5.55067

CAGE analysis