Hb_003052_210

Information

Type -
Description -
Location Contig3052: 190267-191979
Sequence    

Annotation

kegg
ID rcu:RCOM_1464600
description hypothetical protein
nr
ID XP_002514527.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLA8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1464600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000720_190 0.1734658414 - - unknown [Populus trichocarpa x Populus deltoides]
3 Hb_108528_010 0.1749630917 - - unnamed protein product [Coffea canephora]
4 Hb_179520_010 0.1969776059 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
5 Hb_150818_020 0.2019666791 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
6 Hb_105602_020 0.2114419831 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
7 Hb_017134_010 0.2183021706 - - HEV1.2 [Hevea brasiliensis]
8 Hb_008516_040 0.2240509135 - - conserved hypothetical protein [Ricinus communis]
9 Hb_159352_010 0.2276962704 - - hypothetical protein JCGZ_12393 [Jatropha curcas]
10 Hb_001579_140 0.2400938327 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
11 Hb_004064_020 0.2419408395 - - hypothetical protein M569_06853, partial [Genlisea aurea]
12 Hb_002928_210 0.2433123098 - - -
13 Hb_000115_050 0.2519817605 - - -
14 Hb_004291_010 0.2597880852 - - (R)-limonene synthase, putative [Ricinus communis]
15 Hb_027346_020 0.261046522 - - -
16 Hb_000749_240 0.2621234064 - - conserved hypothetical protein [Ricinus communis]
17 Hb_111039_010 0.2630732182 - - -
18 Hb_001959_260 0.266336022 - - -
19 Hb_000912_020 0.27091839 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
20 Hb_004195_100 0.2719697714 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_003052_210 Hb_003052_210 Hb_000720_190 Hb_000720_190 Hb_003052_210--Hb_000720_190 Hb_108528_010 Hb_108528_010 Hb_003052_210--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_003052_210--Hb_179520_010 Hb_150818_020 Hb_150818_020 Hb_003052_210--Hb_150818_020 Hb_105602_020 Hb_105602_020 Hb_003052_210--Hb_105602_020 Hb_017134_010 Hb_017134_010 Hb_003052_210--Hb_017134_010 Hb_000720_190--Hb_108528_010 Hb_000720_190--Hb_179520_010 Hb_027346_020 Hb_027346_020 Hb_000720_190--Hb_027346_020 Hb_159352_010 Hb_159352_010 Hb_000720_190--Hb_159352_010 Hb_001959_260 Hb_001959_260 Hb_000720_190--Hb_001959_260 Hb_108528_010--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_108528_010--Hb_010174_070 Hb_004064_020 Hb_004064_020 Hb_108528_010--Hb_004064_020 Hb_001902_120 Hb_001902_120 Hb_108528_010--Hb_001902_120 Hb_179520_010--Hb_010174_070 Hb_179520_010--Hb_001902_120 Hb_179520_010--Hb_004064_020 Hb_001842_130 Hb_001842_130 Hb_179520_010--Hb_001842_130 Hb_008516_040 Hb_008516_040 Hb_150818_020--Hb_008516_040 Hb_002989_060 Hb_002989_060 Hb_150818_020--Hb_002989_060 Hb_000912_020 Hb_000912_020 Hb_150818_020--Hb_000912_020 Hb_065378_010 Hb_065378_010 Hb_150818_020--Hb_065378_010 Hb_009644_040 Hb_009644_040 Hb_150818_020--Hb_009644_040 Hb_000103_030 Hb_000103_030 Hb_105602_020--Hb_000103_030 Hb_002989_040 Hb_002989_040 Hb_105602_020--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_105602_020--Hb_089100_050 Hb_105602_020--Hb_004064_020 Hb_003913_050 Hb_003913_050 Hb_105602_020--Hb_003913_050 Hb_000920_320 Hb_000920_320 Hb_105602_020--Hb_000920_320 Hb_111039_010 Hb_111039_010 Hb_017134_010--Hb_111039_010 Hb_000749_240 Hb_000749_240 Hb_017134_010--Hb_000749_240 Hb_004291_010 Hb_004291_010 Hb_017134_010--Hb_004291_010 Hb_001579_140 Hb_001579_140 Hb_017134_010--Hb_001579_140 Hb_017134_010--Hb_108528_010 Hb_000115_050 Hb_000115_050 Hb_017134_010--Hb_000115_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222782 0.175155 0.104884 0.0947763 0

CAGE analysis