Hb_003052_220

Information

Type -
Description -
Location Contig3052: 190267-192141
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_220 0.0 - - -
2 Hb_001619_080 0.098363278 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003095_040 0.1365350092 - - hypothetical protein CICLE_v10030016mg [Citrus clementina]
4 Hb_002138_010 0.1605555989 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
5 Hb_005568_080 0.17516085 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000260_290 0.1852427442 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
7 Hb_015690_020 0.1859315487 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
8 Hb_000243_140 0.1875849687 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
9 Hb_000723_160 0.1890794323 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
10 Hb_009510_040 0.1951727965 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
11 Hb_029243_040 0.202576358 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
12 Hb_003878_030 0.2028735599 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
13 Hb_000369_020 0.2072722849 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
14 Hb_000703_250 0.2077319288 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
15 Hb_000003_050 0.208686106 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
16 Hb_000003_270 0.2098899655 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
17 Hb_003209_200 0.2110894215 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
18 Hb_012239_100 0.2123080675 - - hypothetical protein VITISV_043897 [Vitis vinifera]
19 Hb_009486_190 0.2138207849 - - ATP binding protein, putative [Ricinus communis]
20 Hb_021888_050 0.2152681858 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003052_220 Hb_003052_220 Hb_001619_080 Hb_001619_080 Hb_003052_220--Hb_001619_080 Hb_003095_040 Hb_003095_040 Hb_003052_220--Hb_003095_040 Hb_002138_010 Hb_002138_010 Hb_003052_220--Hb_002138_010 Hb_005568_080 Hb_005568_080 Hb_003052_220--Hb_005568_080 Hb_000260_290 Hb_000260_290 Hb_003052_220--Hb_000260_290 Hb_015690_020 Hb_015690_020 Hb_003052_220--Hb_015690_020 Hb_000003_050 Hb_000003_050 Hb_001619_080--Hb_000003_050 Hb_000723_160 Hb_000723_160 Hb_001619_080--Hb_000723_160 Hb_009510_040 Hb_009510_040 Hb_001619_080--Hb_009510_040 Hb_000243_140 Hb_000243_140 Hb_001619_080--Hb_000243_140 Hb_009486_190 Hb_009486_190 Hb_001619_080--Hb_009486_190 Hb_029243_040 Hb_029243_040 Hb_003095_040--Hb_029243_040 Hb_003095_040--Hb_001619_080 Hb_004129_150 Hb_004129_150 Hb_003095_040--Hb_004129_150 Hb_001279_130 Hb_001279_130 Hb_003095_040--Hb_001279_130 Hb_033772_050 Hb_033772_050 Hb_003095_040--Hb_033772_050 Hb_002374_400 Hb_002374_400 Hb_002138_010--Hb_002374_400 Hb_000003_270 Hb_000003_270 Hb_002138_010--Hb_000003_270 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_000742_110 Hb_000742_110 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_003209_200 Hb_003209_200 Hb_002138_010--Hb_003209_200 Hb_021888_050 Hb_021888_050 Hb_005568_080--Hb_021888_050 Hb_000326_060 Hb_000326_060 Hb_005568_080--Hb_000326_060 Hb_005568_080--Hb_033772_050 Hb_005568_080--Hb_009486_190 Hb_005568_080--Hb_009510_040 Hb_000796_250 Hb_000796_250 Hb_000260_290--Hb_000796_250 Hb_000260_290--Hb_015690_020 Hb_001433_180 Hb_001433_180 Hb_000260_290--Hb_001433_180 Hb_001565_110 Hb_001565_110 Hb_000260_290--Hb_001565_110 Hb_031862_040 Hb_031862_040 Hb_000260_290--Hb_031862_040 Hb_000419_060 Hb_000419_060 Hb_015690_020--Hb_000419_060 Hb_001969_090 Hb_001969_090 Hb_015690_020--Hb_001969_090 Hb_003442_070 Hb_003442_070 Hb_015690_020--Hb_003442_070 Hb_002835_180 Hb_002835_180 Hb_015690_020--Hb_002835_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.73802 11.6385 0.4414 0.9693 1.95543 1.55588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4013 22.0423 18.0373 16.3285 0.299929

CAGE analysis