Hb_003053_010

Information

Type -
Description -
Location Contig3053: 9416-12739
Sequence    

Annotation

kegg
ID rcu:RCOM_1095410
description hypothetical protein
nr
ID XP_012081433.1
description PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
swissprot
ID Q55G88
description Proteasome assembly chaperone 3 OS=Dictyostelium discoideum GN=psmG3 PE=3 SV=1
trembl
ID W9SNR9
description Uncharacterized protein OS=Morus notabilis GN=L484_000595 PE=4 SV=1
Gene Ontology
ID GO:0000502
description proteasome assembly chaperone 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32201: 9430-12706
cDNA
(Sanger)
(ID:Location)		 003_O02.ab1: 9510-12591 , 006_G07.ab1: 9510-12592 , 009_D14.ab1: 9430-12635 , 016_B19.ab1: 9510-12564 , 048_A12.ab1: 9430-12675 , 049_A23.ab1: 9513-12529

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_010 0.0 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
2 Hb_006925_040 0.0739429856 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
3 Hb_001141_140 0.0799402088 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
4 Hb_003185_110 0.0850826126 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
5 Hb_000025_620 0.0856749264 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
6 Hb_000297_230 0.0878959537 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
7 Hb_001780_040 0.0888586452 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
8 Hb_003018_010 0.0900350219 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
9 Hb_002768_030 0.0901511981 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
10 Hb_003018_020 0.0946311349 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
11 Hb_000948_210 0.0985983983 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
12 Hb_003683_110 0.0993078981 - - JHL10I11.3 [Jatropha curcas]
13 Hb_000735_040 0.1001300487 - - 60S ribosomal protein L32A [Hevea brasiliensis]
14 Hb_007044_130 0.100267455 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
15 Hb_000453_090 0.1004314096 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
16 Hb_003226_100 0.1014563719 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
17 Hb_006831_130 0.1016046528 - - catalytic, putative [Ricinus communis]
18 Hb_000046_560 0.1040612324 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
19 Hb_174865_010 0.1041313069 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
20 Hb_000996_140 0.1042290758 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]

Gene co-expression network

sample Hb_003053_010 Hb_003053_010 Hb_006925_040 Hb_006925_040 Hb_003053_010--Hb_006925_040 Hb_001141_140 Hb_001141_140 Hb_003053_010--Hb_001141_140 Hb_003185_110 Hb_003185_110 Hb_003053_010--Hb_003185_110 Hb_000025_620 Hb_000025_620 Hb_003053_010--Hb_000025_620 Hb_000297_230 Hb_000297_230 Hb_003053_010--Hb_000297_230 Hb_001780_040 Hb_001780_040 Hb_003053_010--Hb_001780_040 Hb_006925_040--Hb_001141_140 Hb_000046_560 Hb_000046_560 Hb_006925_040--Hb_000046_560 Hb_002783_270 Hb_002783_270 Hb_006925_040--Hb_002783_270 Hb_007044_130 Hb_007044_130 Hb_006925_040--Hb_007044_130 Hb_000996_140 Hb_000996_140 Hb_006925_040--Hb_000996_140 Hb_000735_040 Hb_000735_040 Hb_001141_140--Hb_000735_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001141_140--Hb_003226_100 Hb_001141_140--Hb_007044_130 Hb_003018_020 Hb_003018_020 Hb_001141_140--Hb_003018_020 Hb_003018_010 Hb_003018_010 Hb_003185_110--Hb_003018_010 Hb_000260_550 Hb_000260_550 Hb_003185_110--Hb_000260_550 Hb_003185_110--Hb_007044_130 Hb_126861_010 Hb_126861_010 Hb_003185_110--Hb_126861_010 Hb_000236_390 Hb_000236_390 Hb_003185_110--Hb_000236_390 Hb_001504_110 Hb_001504_110 Hb_000025_620--Hb_001504_110 Hb_000025_620--Hb_003226_100 Hb_000025_620--Hb_001780_040 Hb_000025_620--Hb_003018_010 Hb_000127_180 Hb_000127_180 Hb_000025_620--Hb_000127_180 Hb_002056_050 Hb_002056_050 Hb_000025_620--Hb_002056_050 Hb_002768_030 Hb_002768_030 Hb_000297_230--Hb_002768_030 Hb_000948_210 Hb_000948_210 Hb_000297_230--Hb_000948_210 Hb_002217_050 Hb_002217_050 Hb_000297_230--Hb_002217_050 Hb_077354_010 Hb_077354_010 Hb_000297_230--Hb_077354_010 Hb_003683_110 Hb_003683_110 Hb_000297_230--Hb_003683_110 Hb_001780_040--Hb_002768_030 Hb_001780_040--Hb_003683_110 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_001780_040--Hb_000127_180 Hb_001780_040--Hb_003226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.3314 8.2209 48.6363 19.2207 21.7959 27.5063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.8411 109.927 33.0382 25.5833 15.3823

CAGE analysis