Hb_003053_020

Information

Type -
Description -
Location Contig3053: 12698-29310
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34910g
description POPTRDRAFT_1068795; hypothetical protein
nr
ID XP_012081446.1
description PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
swissprot
ID Q551H4
description Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1
trembl
ID A0A067LDN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09582 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32204: 13215-14109 , PASA_asmbl_32205: 14110-15321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_020 0.0 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
2 Hb_000783_020 0.0548778169 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
3 Hb_003697_040 0.0588176555 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
4 Hb_019263_020 0.0681451769 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
5 Hb_000985_030 0.0704188668 - - PREDICTED: RRP15-like protein [Populus euphratica]
6 Hb_007904_260 0.0727898645 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
7 Hb_011534_030 0.0734401899 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
8 Hb_000436_130 0.0734551046 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
9 Hb_020805_130 0.0775679648 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_000617_150 0.0779848579 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
11 Hb_029879_130 0.0782037286 - - Derlin-2, putative [Ricinus communis]
12 Hb_002046_180 0.0792647163 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
13 Hb_086639_030 0.079416611 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_000016_160 0.0799684613 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
15 Hb_000120_460 0.0804817949 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
16 Hb_000928_210 0.0807725473 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
17 Hb_000373_130 0.0809473839 - - PREDICTED: protein FAM188A [Jatropha curcas]
18 Hb_001512_030 0.0811061218 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
19 Hb_004254_120 0.0815768676 - - conserved hypothetical protein [Ricinus communis]
20 Hb_172932_010 0.0821586034 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003053_020 Hb_003053_020 Hb_000783_020 Hb_000783_020 Hb_003053_020--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_003053_020--Hb_003697_040 Hb_019263_020 Hb_019263_020 Hb_003053_020--Hb_019263_020 Hb_000985_030 Hb_000985_030 Hb_003053_020--Hb_000985_030 Hb_007904_260 Hb_007904_260 Hb_003053_020--Hb_007904_260 Hb_011534_030 Hb_011534_030 Hb_003053_020--Hb_011534_030 Hb_000783_020--Hb_000985_030 Hb_001489_080 Hb_001489_080 Hb_000783_020--Hb_001489_080 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_013607_040 Hb_013607_040 Hb_019263_020--Hb_013607_040 Hb_002235_280 Hb_002235_280 Hb_019263_020--Hb_002235_280 Hb_002284_200 Hb_002284_200 Hb_019263_020--Hb_002284_200 Hb_019263_020--Hb_011534_030 Hb_000373_130 Hb_000373_130 Hb_019263_020--Hb_000373_130 Hb_000985_030--Hb_001489_080 Hb_002169_040 Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070 Hb_000985_030--Hb_004934_100 Hb_000046_320 Hb_000046_320 Hb_007904_260--Hb_000046_320 Hb_001512_030 Hb_001512_030 Hb_007904_260--Hb_001512_030 Hb_006117_070 Hb_006117_070 Hb_007904_260--Hb_006117_070 Hb_007904_260--Hb_003697_040 Hb_000638_250 Hb_000638_250 Hb_007904_260--Hb_000638_250 Hb_172932_010 Hb_172932_010 Hb_011534_030--Hb_172932_010 Hb_000617_150 Hb_000617_150 Hb_011534_030--Hb_000617_150 Hb_009113_070 Hb_009113_070 Hb_011534_030--Hb_009113_070 Hb_001454_190 Hb_001454_190 Hb_011534_030--Hb_001454_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5826 6.82607 7.60447 9.57678 8.75845 11.8054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5849 22.0313 24.8178 10.6077 12.225

CAGE analysis