Hb_003053_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3053: 33764-34816
Sequence    

Annotation

kegg
ID rcu:RCOM_1397390
description hypothetical protein
nr
ID XP_002520412.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID B9S343
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1397390 PE=4 SV=1
Gene Ontology
ID GO:0043531
description cc-nbs-lrr resistance isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_040 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_003462_130 0.0171891432 - - -
3 Hb_005357_190 0.0377674909 - - Protein COBRA precursor, putative [Ricinus communis]
4 Hb_001217_030 0.0386301579 - - -
5 Hb_003494_250 0.0808482545 - - -
6 Hb_105478_010 0.0982383007 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
7 Hb_008147_110 0.1195771347 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
8 Hb_011781_050 0.1206868299 - - -
9 Hb_002307_060 0.1339282009 - - -
10 Hb_000290_010 0.1368807965 - - -
11 Hb_000089_230 0.151770725 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
12 Hb_003384_050 0.1528474776 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002805_080 0.1586993367 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
14 Hb_000105_090 0.1604430573 - - -
15 Hb_001631_120 0.1616833281 - - unnamed protein product [Vitis vinifera]
16 Hb_000705_310 0.1626865536 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
17 Hb_001829_030 0.1651961241 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
18 Hb_004021_110 0.2274720334 - - -
19 Hb_001396_060 0.2358094066 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001032_040 0.2382143286 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003053_040 Hb_003053_040 Hb_003462_130 Hb_003462_130 Hb_003053_040--Hb_003462_130 Hb_005357_190 Hb_005357_190 Hb_003053_040--Hb_005357_190 Hb_001217_030 Hb_001217_030 Hb_003053_040--Hb_001217_030 Hb_003494_250 Hb_003494_250 Hb_003053_040--Hb_003494_250 Hb_105478_010 Hb_105478_010 Hb_003053_040--Hb_105478_010 Hb_008147_110 Hb_008147_110 Hb_003053_040--Hb_008147_110 Hb_003462_130--Hb_005357_190 Hb_003462_130--Hb_001217_030 Hb_003462_130--Hb_003494_250 Hb_011781_050 Hb_011781_050 Hb_003462_130--Hb_011781_050 Hb_003462_130--Hb_105478_010 Hb_005357_190--Hb_001217_030 Hb_005357_190--Hb_003494_250 Hb_005357_190--Hb_011781_050 Hb_002307_060 Hb_002307_060 Hb_005357_190--Hb_002307_060 Hb_001217_030--Hb_003494_250 Hb_001217_030--Hb_011781_050 Hb_001217_030--Hb_002307_060 Hb_003494_250--Hb_011781_050 Hb_003494_250--Hb_002307_060 Hb_000290_010 Hb_000290_010 Hb_003494_250--Hb_000290_010 Hb_105478_010--Hb_008147_110 Hb_001829_030 Hb_001829_030 Hb_105478_010--Hb_001829_030 Hb_105478_010--Hb_005357_190 Hb_105478_010--Hb_001217_030 Hb_008147_110--Hb_001829_030 Hb_001396_060 Hb_001396_060 Hb_008147_110--Hb_001396_060 Hb_008147_110--Hb_003462_130 Hb_000019_090 Hb_000019_090 Hb_008147_110--Hb_000019_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.132804 0 0 0.0716965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis