Hb_003053_090

Information

Type -
Description -
Location Contig3053: 123159-126977
Sequence    

Annotation

kegg
ID cit:102616455
description carbonic anhydrase, chloroplastic-like
nr
ID XP_012081520.1
description PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
swissprot
ID P17067
description Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1
trembl
ID A0A067LLS5
description Carbonic anhydrase OS=Jatropha curcas GN=JCGZ_09588 PE=3 SV=1
Gene Ontology
ID GO:0004089
description carbonic anhydrase isoform 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32217: 117323-125226 , PASA_asmbl_32218: 117411-124463
cDNA
(Sanger)
(ID:Location)		 005_I16.ab1: 117411-124441 , 007_P11.ab1: 117411-124275 , 009_G20.ab1: 117404-124205 , 010_N08.ab1: 117404-124275 , 018_N06.ab1: 117411-124463 , 019_O21.ab1: 117323-123445 , 037_D24.ab1: 117411-124466 , 043_D09.ab1: 117404-124275 , 047_A22.ab1: 117413-124422 , 049_C18.ab1: 117404-124407 , 053_O11.ab1: 117427-124257

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_090 0.0 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
2 Hb_020859_010 0.0317506514 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
3 Hb_004150_020 0.0402858967 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_015981_010 0.0448173952 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_002040_070 0.051545131 - - -
6 Hb_027751_070 0.0540607563 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
7 Hb_006040_090 0.0574024499 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
8 Hb_000893_040 0.0585639452 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
9 Hb_001210_110 0.0596933816 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
10 Hb_008489_030 0.0598155359 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_000853_280 0.0606981851 - - PREDICTED: extensin-like [Jatropha curcas]
12 Hb_006495_030 0.0612974209 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
13 Hb_000977_260 0.0673822244 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
14 Hb_007933_010 0.0703711612 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_005656_220 0.0728352303 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
16 Hb_000083_010 0.0740233472 - - -
17 Hb_000398_110 0.0792654605 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
18 Hb_000349_150 0.0818000524 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
19 Hb_000922_110 0.0839650528 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
20 Hb_003053_100 0.0851858955 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]

Gene co-expression network

sample Hb_003053_090 Hb_003053_090 Hb_020859_010 Hb_020859_010 Hb_003053_090--Hb_020859_010 Hb_004150_020 Hb_004150_020 Hb_003053_090--Hb_004150_020 Hb_015981_010 Hb_015981_010 Hb_003053_090--Hb_015981_010 Hb_002040_070 Hb_002040_070 Hb_003053_090--Hb_002040_070 Hb_027751_070 Hb_027751_070 Hb_003053_090--Hb_027751_070 Hb_006040_090 Hb_006040_090 Hb_003053_090--Hb_006040_090 Hb_020859_010--Hb_015981_010 Hb_000893_040 Hb_000893_040 Hb_020859_010--Hb_000893_040 Hb_020859_010--Hb_004150_020 Hb_008489_030 Hb_008489_030 Hb_020859_010--Hb_008489_030 Hb_020859_010--Hb_027751_070 Hb_004150_020--Hb_015981_010 Hb_004150_020--Hb_000893_040 Hb_004150_020--Hb_008489_030 Hb_000977_260 Hb_000977_260 Hb_004150_020--Hb_000977_260 Hb_015981_010--Hb_008489_030 Hb_015981_010--Hb_000893_040 Hb_002997_060 Hb_002997_060 Hb_015981_010--Hb_002997_060 Hb_005656_220 Hb_005656_220 Hb_002040_070--Hb_005656_220 Hb_001210_110 Hb_001210_110 Hb_002040_070--Hb_001210_110 Hb_002040_070--Hb_027751_070 Hb_002040_070--Hb_020859_010 Hb_006495_030 Hb_006495_030 Hb_002040_070--Hb_006495_030 Hb_000083_010 Hb_000083_010 Hb_027751_070--Hb_000083_010 Hb_000398_110 Hb_000398_110 Hb_027751_070--Hb_000398_110 Hb_027751_070--Hb_000977_260 Hb_027751_070--Hb_001210_110 Hb_006040_090--Hb_006495_030 Hb_006040_090--Hb_001210_110 Hb_003053_100 Hb_003053_100 Hb_006040_090--Hb_003053_100 Hb_006040_090--Hb_002040_070 Hb_006040_090--Hb_004150_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.013804 0.0534362 48.8151 12.2614 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.266154 0.320319 0 0 420.446

CAGE analysis