Hb_003054_070

Information

Type transcription factor
Description TF Family: Orphans
Location Contig3054: 134599-134994
Sequence    

Annotation

kegg
ID rcu:RCOM_1549750
description DNA binding protein, putative
nr
ID XP_002515724.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LJB7
description B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1
trembl
ID B9RPQ5
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1549750 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32226: 135099-135413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003054_070 0.0 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
2 Hb_010164_030 0.0623742079 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
3 Hb_001117_050 0.0878233763 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
4 Hb_000012_350 0.0880521776 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
5 Hb_008221_200 0.0927327253 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
6 Hb_001427_100 0.0936715551 - - acc synthase, putative [Ricinus communis]
7 Hb_147006_010 0.0949849817 - - receptor like protein 35 [Arabidopsis thaliana]
8 Hb_001794_040 0.0960063256 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
9 Hb_039946_060 0.0986256122 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
10 Hb_000617_330 0.1006589491 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
11 Hb_043630_030 0.1031192554 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
12 Hb_000718_060 0.1089602599 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
13 Hb_000160_250 0.1090578291 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
14 Hb_005542_120 0.1102170452 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
15 Hb_000620_040 0.1123520039 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_009393_090 0.1159372826 - - acyltransferase, putative [Ricinus communis]
17 Hb_001289_010 0.1165741292 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
18 Hb_036520_030 0.1181262223 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
19 Hb_008054_030 0.1192933696 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
20 Hb_011574_020 0.1195326915 - - hypothetical protein JCGZ_21524 [Jatropha curcas]

Gene co-expression network

sample Hb_003054_070 Hb_003054_070 Hb_010164_030 Hb_010164_030 Hb_003054_070--Hb_010164_030 Hb_001117_050 Hb_001117_050 Hb_003054_070--Hb_001117_050 Hb_000012_350 Hb_000012_350 Hb_003054_070--Hb_000012_350 Hb_008221_200 Hb_008221_200 Hb_003054_070--Hb_008221_200 Hb_001427_100 Hb_001427_100 Hb_003054_070--Hb_001427_100 Hb_147006_010 Hb_147006_010 Hb_003054_070--Hb_147006_010 Hb_010164_030--Hb_147006_010 Hb_010164_030--Hb_000012_350 Hb_010164_030--Hb_001427_100 Hb_010164_030--Hb_001117_050 Hb_036520_030 Hb_036520_030 Hb_010164_030--Hb_036520_030 Hb_005542_120 Hb_005542_120 Hb_001117_050--Hb_005542_120 Hb_001794_040 Hb_001794_040 Hb_001117_050--Hb_001794_040 Hb_008054_030 Hb_008054_030 Hb_001117_050--Hb_008054_030 Hb_000392_110 Hb_000392_110 Hb_001117_050--Hb_000392_110 Hb_001117_050--Hb_008221_200 Hb_000012_350--Hb_001794_040 Hb_011574_020 Hb_011574_020 Hb_000012_350--Hb_011574_020 Hb_020738_010 Hb_020738_010 Hb_000012_350--Hb_020738_010 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020 Hb_000718_060 Hb_000718_060 Hb_008221_200--Hb_000718_060 Hb_002942_200 Hb_002942_200 Hb_008221_200--Hb_002942_200 Hb_008221_200--Hb_008054_030 Hb_009393_090 Hb_009393_090 Hb_008221_200--Hb_009393_090 Hb_003339_010 Hb_003339_010 Hb_008221_200--Hb_003339_010 Hb_039946_060 Hb_039946_060 Hb_001427_100--Hb_039946_060 Hb_001408_080 Hb_001408_080 Hb_001427_100--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001427_100--Hb_005111_020 Hb_000020_210 Hb_000020_210 Hb_001427_100--Hb_000020_210 Hb_000620_040 Hb_000620_040 Hb_147006_010--Hb_000620_040 Hb_133974_010 Hb_133974_010 Hb_147006_010--Hb_133974_010 Hb_003032_030 Hb_003032_030 Hb_147006_010--Hb_003032_030 Hb_015934_090 Hb_015934_090 Hb_147006_010--Hb_015934_090 Hb_004032_290 Hb_004032_290 Hb_147006_010--Hb_004032_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 42.358 87.7507 176.478 0.0867583 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.60953 0.159593 1.5277 8.77042 94.4822

CAGE analysis