Hb_003055_050

Information

Type -
Description -
Location Contig3055: 25739-33263
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04510g
description POPTRDRAFT_568274; hypothetical protein
nr
ID XP_002316643.2
description hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HYY1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s04510g PE=4 SV=2
Gene Ontology
ID GO:0016021
description hypothetical protein POPTR_0011s04510g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32239: 25815-33244
cDNA
(Sanger)
(ID:Location)		 053_O14.ab1: 30306-33244

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_050 0.0 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
2 Hb_017098_030 0.0836533309 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
3 Hb_000345_560 0.0934932236 - - -
4 Hb_000085_340 0.0966297462 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
5 Hb_007992_030 0.0989090057 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
6 Hb_002955_030 0.0992825606 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001493_100 0.1001474016 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
8 Hb_006637_060 0.1020503873 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
9 Hb_003453_010 0.1020753262 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002391_110 0.1032040444 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
11 Hb_000365_360 0.1057369756 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
12 Hb_000933_140 0.1057763211 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
13 Hb_000003_090 0.1064896353 - - -
14 Hb_001437_040 0.1070383536 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
15 Hb_027892_060 0.1077281689 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
16 Hb_001437_300 0.1092275414 - - -
17 Hb_013479_020 0.1111728 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
18 Hb_004813_010 0.1113680108 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_002716_150 0.1114686815 - - starch synthase isoform I [Manihot esculenta]
20 Hb_000028_050 0.1118206215 - - aldose-1-epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003055_050 Hb_003055_050 Hb_017098_030 Hb_017098_030 Hb_003055_050--Hb_017098_030 Hb_000345_560 Hb_000345_560 Hb_003055_050--Hb_000345_560 Hb_000085_340 Hb_000085_340 Hb_003055_050--Hb_000085_340 Hb_007992_030 Hb_007992_030 Hb_003055_050--Hb_007992_030 Hb_002955_030 Hb_002955_030 Hb_003055_050--Hb_002955_030 Hb_001493_100 Hb_001493_100 Hb_003055_050--Hb_001493_100 Hb_004374_010 Hb_004374_010 Hb_017098_030--Hb_004374_010 Hb_001437_300 Hb_001437_300 Hb_017098_030--Hb_001437_300 Hb_006261_040 Hb_006261_040 Hb_017098_030--Hb_006261_040 Hb_002851_060 Hb_002851_060 Hb_017098_030--Hb_002851_060 Hb_004502_030 Hb_004502_030 Hb_017098_030--Hb_004502_030 Hb_000345_560--Hb_007992_030 Hb_000345_560--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_000345_560--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_000345_560--Hb_002997_170 Hb_168918_020 Hb_168918_020 Hb_000345_560--Hb_168918_020 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_026048_090 Hb_026048_090 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_007992_030--Hb_004502_030 Hb_007992_030--Hb_000847_070 Hb_001514_020 Hb_001514_020 Hb_007992_030--Hb_001514_020 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_001504_170 Hb_001504_170 Hb_002955_030--Hb_001504_170 Hb_002955_030--Hb_000345_560 Hb_031042_040 Hb_031042_040 Hb_002955_030--Hb_031042_040 Hb_000028_050 Hb_000028_050 Hb_002955_030--Hb_000028_050 Hb_002955_030--Hb_002377_040 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020 Hb_000784_090 Hb_000784_090 Hb_001493_100--Hb_000784_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
183.521 14.8563 11.9583 20.1415 149.568 188.508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
144.226 104.208 70.2564 17.3947 32.9608

CAGE analysis