Hb_003055_110

Information

Type -
Description -
Location Contig3055: 79937-80218
Sequence    

Annotation

kegg
ID rcu:RCOM_1062440
description hypothetical protein
nr
ID XP_002521406.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5Y7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32253: 79544-80389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000594_070 0.1052597509 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_000189_170 0.137135242 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_010172_110 0.16046586 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_068194_010 0.1869659583 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
6 Hb_001437_280 0.1870265988 - - AMP dependent CoA ligase, putative [Ricinus communis]
7 Hb_114310_100 0.1876317333 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
8 Hb_000820_140 0.1909877306 - - histone H4 [Zea mays]
9 Hb_006153_040 0.1912687564 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
10 Hb_001329_070 0.1951446887 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
11 Hb_000260_620 0.1952270799 - - Thermosensitive gluconokinase, putative [Ricinus communis]
12 Hb_001817_100 0.1952772924 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
13 Hb_154038_020 0.1992133512 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
14 Hb_006889_020 0.1993828427 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_001975_030 0.2012271142 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
16 Hb_027298_030 0.2040816777 - - PREDICTED: histone H1-like [Jatropha curcas]
17 Hb_000718_040 0.2050384535 - - PREDICTED: lipase member N [Jatropha curcas]
18 Hb_002045_060 0.2065345942 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
19 Hb_011512_160 0.207464775 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003602_060 0.2081474088 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003055_110 Hb_003055_110 Hb_000594_070 Hb_000594_070 Hb_003055_110--Hb_000594_070 Hb_000189_170 Hb_000189_170 Hb_003055_110--Hb_000189_170 Hb_010172_110 Hb_010172_110 Hb_003055_110--Hb_010172_110 Hb_068194_010 Hb_068194_010 Hb_003055_110--Hb_068194_010 Hb_001437_280 Hb_001437_280 Hb_003055_110--Hb_001437_280 Hb_114310_100 Hb_114310_100 Hb_003055_110--Hb_114310_100 Hb_000594_070--Hb_000189_170 Hb_001300_170 Hb_001300_170 Hb_000594_070--Hb_001300_170 Hb_000594_070--Hb_010172_110 Hb_027380_190 Hb_027380_190 Hb_000594_070--Hb_027380_190 Hb_002627_020 Hb_002627_020 Hb_000594_070--Hb_002627_020 Hb_000189_170--Hb_010172_110 Hb_083940_010 Hb_083940_010 Hb_000189_170--Hb_083940_010 Hb_007002_040 Hb_007002_040 Hb_000189_170--Hb_007002_040 Hb_000189_170--Hb_114310_100 Hb_001221_330 Hb_001221_330 Hb_000189_170--Hb_001221_330 Hb_000331_350 Hb_000331_350 Hb_010172_110--Hb_000331_350 Hb_010172_110--Hb_007002_040 Hb_002811_280 Hb_002811_280 Hb_010172_110--Hb_002811_280 Hb_000310_120 Hb_000310_120 Hb_010172_110--Hb_000310_120 Hb_001329_070 Hb_001329_070 Hb_010172_110--Hb_001329_070 Hb_000676_020 Hb_000676_020 Hb_068194_010--Hb_000676_020 Hb_000820_140 Hb_000820_140 Hb_068194_010--Hb_000820_140 Hb_006445_020 Hb_006445_020 Hb_068194_010--Hb_006445_020 Hb_009851_010 Hb_009851_010 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230 Hb_007621_010 Hb_007621_010 Hb_001437_280--Hb_007621_010 Hb_001437_280--Hb_000820_140 Hb_000718_040 Hb_000718_040 Hb_001437_280--Hb_000718_040 Hb_020437_020 Hb_020437_020 Hb_001437_280--Hb_020437_020 Hb_002486_060 Hb_002486_060 Hb_001437_280--Hb_002486_060 Hb_000935_080 Hb_000935_080 Hb_114310_100--Hb_000935_080 Hb_000406_030 Hb_000406_030 Hb_114310_100--Hb_000406_030 Hb_000317_270 Hb_000317_270 Hb_114310_100--Hb_000317_270 Hb_000941_060 Hb_000941_060 Hb_114310_100--Hb_000941_060 Hb_004052_100 Hb_004052_100 Hb_114310_100--Hb_004052_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186926 0.884385 8.52984 4.06935 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0801 3.81928 3.33967 4.20845 4.64444

CAGE analysis