Hb_003055_120

Information

Type -
Description -
Location Contig3055: 80976-84879
Sequence    

Annotation

kegg
ID rcu:RCOM_1062430
description Protein C20orf11, putative
nr
ID XP_002521405.1
description Protein C20orf11, putative [Ricinus communis]
swissprot
ID Q54X16
description Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2
trembl
ID B9S5Y6
description Protein C20orf11, putative OS=Ricinus communis GN=RCOM_1062430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32254: 81023-84907 , PASA_asmbl_32255: 81033-84970
cDNA
(Sanger)
(ID:Location)		 014_N01.ab1: 82395-84900 , 016_F19.ab1: 82355-84907 , 041_E14.ab1: 82390-84907

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_120 0.0 - - Protein C20orf11, putative [Ricinus communis]
2 Hb_002874_190 0.0608845369 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
3 Hb_000988_080 0.0704398817 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_003687_110 0.0752055552 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
5 Hb_012762_050 0.0817915257 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
6 Hb_005539_350 0.0831815206 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011381_100 0.0834277594 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
8 Hb_000221_220 0.0835393793 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
9 Hb_006541_030 0.0868939759 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
10 Hb_005686_060 0.0886325049 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
11 Hb_000103_560 0.0901908493 - - ADP-ribosylation factor, putative [Ricinus communis]
12 Hb_063716_050 0.0907895372 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
13 Hb_010172_080 0.0913485718 - - acetylglucosaminyltransferase, putative [Ricinus communis]
14 Hb_001252_110 0.0929439096 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
15 Hb_001604_080 0.0935194109 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
16 Hb_000123_120 0.0937205918 - - actin depolymerizing factor 4 [Hevea brasiliensis]
17 Hb_009265_070 0.0937598452 - - PREDICTED: uncharacterized protein LOC105649623 isoform X1 [Jatropha curcas]
18 Hb_009773_020 0.0940296931 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
19 Hb_004545_060 0.0941263855 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
20 Hb_001301_160 0.094704283 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003055_120 Hb_003055_120 Hb_002874_190 Hb_002874_190 Hb_003055_120--Hb_002874_190 Hb_000988_080 Hb_000988_080 Hb_003055_120--Hb_000988_080 Hb_003687_110 Hb_003687_110 Hb_003055_120--Hb_003687_110 Hb_012762_050 Hb_012762_050 Hb_003055_120--Hb_012762_050 Hb_005539_350 Hb_005539_350 Hb_003055_120--Hb_005539_350 Hb_011381_100 Hb_011381_100 Hb_003055_120--Hb_011381_100 Hb_002874_190--Hb_005539_350 Hb_165132_010 Hb_165132_010 Hb_002874_190--Hb_165132_010 Hb_002874_190--Hb_003687_110 Hb_006541_030 Hb_006541_030 Hb_002874_190--Hb_006541_030 Hb_000840_030 Hb_000840_030 Hb_002874_190--Hb_000840_030 Hb_000988_080--Hb_006541_030 Hb_006922_110 Hb_006922_110 Hb_000988_080--Hb_006922_110 Hb_000510_320 Hb_000510_320 Hb_000988_080--Hb_000510_320 Hb_000056_200 Hb_000056_200 Hb_000988_080--Hb_000056_200 Hb_009265_070 Hb_009265_070 Hb_000988_080--Hb_009265_070 Hb_003687_110--Hb_165132_010 Hb_010180_020 Hb_010180_020 Hb_003687_110--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_003687_110--Hb_001604_080 Hb_002007_060 Hb_002007_060 Hb_003687_110--Hb_002007_060 Hb_002411_170 Hb_002411_170 Hb_003687_110--Hb_002411_170 Hb_135545_010 Hb_135545_010 Hb_012762_050--Hb_135545_010 Hb_000473_040 Hb_000473_040 Hb_012762_050--Hb_000473_040 Hb_000221_220 Hb_000221_220 Hb_012762_050--Hb_000221_220 Hb_001512_070 Hb_001512_070 Hb_012762_050--Hb_001512_070 Hb_012762_050--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_012762_050--Hb_011571_020 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_005539_350--Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_005539_350--Hb_007380_070 Hb_005539_350--Hb_002007_060 Hb_005539_350--Hb_000840_030 Hb_029866_040 Hb_029866_040 Hb_011381_100--Hb_029866_040 Hb_000377_060 Hb_000377_060 Hb_011381_100--Hb_000377_060 Hb_005431_010 Hb_005431_010 Hb_011381_100--Hb_005431_010 Hb_011381_100--Hb_000510_320 Hb_000009_160 Hb_000009_160 Hb_011381_100--Hb_000009_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.16 37.6333 48.3007 57.7259 77.8092 112.642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.1087 156.836 133.224 31.1882 19.5605

CAGE analysis