Hb_003055_140

Information

Type transcription factor
Description TF Family: SNF2
Location Contig3055: 93347-106234
Sequence    

Annotation

kegg
ID vvi:100265351
description uncharacterized LOC100265351
nr
ID XP_012091545.1
description PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
swissprot
ID O60177
description Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=3 SV=1
trembl
ID A0A067JAX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21388 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna repair helicase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32256: 93343-94942 , PASA_asmbl_32257: 94211-94942 , PASA_asmbl_32258: 94997-106156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_140 0.0 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
2 Hb_000442_010 0.078292104 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
3 Hb_003728_040 0.080193505 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
4 Hb_001629_060 0.1007796279 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
5 Hb_001104_170 0.1008977684 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
6 Hb_000953_050 0.1020697776 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
7 Hb_000866_210 0.1049608173 transcription factor TF Family: BES1 PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
8 Hb_001766_020 0.1087798226 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
9 Hb_002263_040 0.1088615751 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_000347_120 0.1099833985 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
11 Hb_005725_210 0.1128376618 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
12 Hb_052764_030 0.116893326 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
13 Hb_002007_160 0.1211189263 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
14 Hb_004899_040 0.1239798667 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
15 Hb_005389_160 0.1242063 - - PREDICTED: casein kinase I [Jatropha curcas]
16 Hb_000291_010 0.1249625154 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
17 Hb_005018_020 0.1250557362 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
18 Hb_000720_150 0.1255510273 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
19 Hb_002798_070 0.1260071887 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
20 Hb_012573_040 0.1260729906 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]

Gene co-expression network

sample Hb_003055_140 Hb_003055_140 Hb_000442_010 Hb_000442_010 Hb_003055_140--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_003055_140--Hb_003728_040 Hb_001629_060 Hb_001629_060 Hb_003055_140--Hb_001629_060 Hb_001104_170 Hb_001104_170 Hb_003055_140--Hb_001104_170 Hb_000953_050 Hb_000953_050 Hb_003055_140--Hb_000953_050 Hb_000866_210 Hb_000866_210 Hb_003055_140--Hb_000866_210 Hb_002798_070 Hb_002798_070 Hb_000442_010--Hb_002798_070 Hb_002263_040 Hb_002263_040 Hb_000442_010--Hb_002263_040 Hb_000442_010--Hb_001104_170 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_005389_160 Hb_005389_160 Hb_000442_010--Hb_005389_160 Hb_000243_250 Hb_000243_250 Hb_000442_010--Hb_000243_250 Hb_001766_020 Hb_001766_020 Hb_003728_040--Hb_001766_020 Hb_003728_040--Hb_000442_010 Hb_004440_040 Hb_004440_040 Hb_003728_040--Hb_004440_040 Hb_003728_040--Hb_001104_170 Hb_000347_120 Hb_000347_120 Hb_003728_040--Hb_000347_120 Hb_002007_160 Hb_002007_160 Hb_001629_060--Hb_002007_160 Hb_006117_080 Hb_006117_080 Hb_001629_060--Hb_006117_080 Hb_001629_060--Hb_000442_010 Hb_000479_070 Hb_000479_070 Hb_001629_060--Hb_000479_070 Hb_009150_020 Hb_009150_020 Hb_001629_060--Hb_009150_020 Hb_000015_170 Hb_000015_170 Hb_001629_060--Hb_000015_170 Hb_001104_170--Hb_005389_160 Hb_001104_170--Hb_001766_020 Hb_000291_010 Hb_000291_010 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_005496_180 Hb_005496_180 Hb_000953_050--Hb_005496_180 Hb_002572_050 Hb_002572_050 Hb_000953_050--Hb_002572_050 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_000953_050--Hb_001629_060 Hb_002897_050 Hb_002897_050 Hb_000866_210--Hb_002897_050 Hb_052764_030 Hb_052764_030 Hb_000866_210--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_000866_210--Hb_009486_160 Hb_011631_010 Hb_011631_010 Hb_000866_210--Hb_011631_010 Hb_011249_060 Hb_011249_060 Hb_000866_210--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.31347 39.5393 13.2654 7.11377 8.21627 8.57638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14012 10.0625 16.8445 10.4935 12.9057

CAGE analysis