Hb_003055_160

Information

Type -
Description -
Location Contig3055: 119088-125839
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03810g
description POPTRDRAFT_857018; hypothetical protein
nr
ID XP_012091549.1
description PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
swissprot
ID Q93YV0
description (E,E)-geranyllinalool synthase OS=Arabidopsis thaliana GN=GES PE=1 SV=1
trembl
ID A0A076GH23
description Terpene synthase OS=Populus trichocarpa GN=TPS10 PE=2 SV=1
Gene Ontology
ID GO:0000287
description p -nerolidol ( )-geranyl linalool synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32260: 119304-120400 , PASA_asmbl_32261: 121575-122616 , PASA_asmbl_32262: 122699-123000 , PASA_asmbl_32263: 123057-123485 , PASA_asmbl_32264: 125586-125727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_160 0.0 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
2 Hb_123713_010 0.1013904985 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_004724_280 0.1059987627 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001856_210 0.1084327291 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
5 Hb_000089_090 0.1100451833 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
6 Hb_105377_010 0.1158770992 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
7 Hb_001123_330 0.1163404784 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
8 Hb_005666_010 0.1186480924 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
9 Hb_087717_010 0.1187290017 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
10 Hb_007474_010 0.1190079885 - - vacuolar invertase [Manihot esculenta]
11 Hb_012092_040 0.1190650646 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
12 Hb_164853_010 0.1235581901 - - Patatin precursor, putative [Ricinus communis]
13 Hb_000445_260 0.1246636923 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
14 Hb_000336_010 0.1258923155 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
15 Hb_003464_010 0.1265044884 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001091_060 0.1295554737 - - hypothetical protein JCGZ_27062 [Jatropha curcas]
17 Hb_000679_290 0.1298070802 transcription factor TF Family: AUX/IAA ATP binding protein, putative [Ricinus communis]
18 Hb_004933_010 0.1305307417 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
19 Hb_001141_270 0.1322876634 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
20 Hb_010080_050 0.132635449 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]

Gene co-expression network

sample Hb_003055_160 Hb_003055_160 Hb_123713_010 Hb_123713_010 Hb_003055_160--Hb_123713_010 Hb_004724_280 Hb_004724_280 Hb_003055_160--Hb_004724_280 Hb_001856_210 Hb_001856_210 Hb_003055_160--Hb_001856_210 Hb_000089_090 Hb_000089_090 Hb_003055_160--Hb_000089_090 Hb_105377_010 Hb_105377_010 Hb_003055_160--Hb_105377_010 Hb_001123_330 Hb_001123_330 Hb_003055_160--Hb_001123_330 Hb_005353_010 Hb_005353_010 Hb_123713_010--Hb_005353_010 Hb_000336_010 Hb_000336_010 Hb_123713_010--Hb_000336_010 Hb_164853_010 Hb_164853_010 Hb_123713_010--Hb_164853_010 Hb_123713_010--Hb_004724_280 Hb_123713_010--Hb_105377_010 Hb_007317_050 Hb_007317_050 Hb_123713_010--Hb_007317_050 Hb_004724_280--Hb_000336_010 Hb_004724_280--Hb_001123_330 Hb_000175_080 Hb_000175_080 Hb_004724_280--Hb_000175_080 Hb_003420_010 Hb_003420_010 Hb_004724_280--Hb_003420_010 Hb_007474_010 Hb_007474_010 Hb_004724_280--Hb_007474_010 Hb_002078_070 Hb_002078_070 Hb_004724_280--Hb_002078_070 Hb_000445_260 Hb_000445_260 Hb_001856_210--Hb_000445_260 Hb_174639_010 Hb_174639_010 Hb_001856_210--Hb_174639_010 Hb_010080_050 Hb_010080_050 Hb_001856_210--Hb_010080_050 Hb_000878_080 Hb_000878_080 Hb_001856_210--Hb_000878_080 Hb_004880_040 Hb_004880_040 Hb_001856_210--Hb_004880_040 Hb_009113_020 Hb_009113_020 Hb_001856_210--Hb_009113_020 Hb_001247_060 Hb_001247_060 Hb_000089_090--Hb_001247_060 Hb_012092_040 Hb_012092_040 Hb_000089_090--Hb_012092_040 Hb_000035_230 Hb_000035_230 Hb_000089_090--Hb_000035_230 Hb_059502_010 Hb_059502_010 Hb_000089_090--Hb_059502_010 Hb_003464_010 Hb_003464_010 Hb_000089_090--Hb_003464_010 Hb_000962_060 Hb_000962_060 Hb_000089_090--Hb_000962_060 Hb_003598_020 Hb_003598_020 Hb_105377_010--Hb_003598_020 Hb_105377_010--Hb_004880_040 Hb_003185_040 Hb_003185_040 Hb_105377_010--Hb_003185_040 Hb_105377_010--Hb_000336_010 Hb_105377_010--Hb_004724_280 Hb_005731_040 Hb_005731_040 Hb_105377_010--Hb_005731_040 Hb_001123_330--Hb_000336_010 Hb_001123_330--Hb_000175_080 Hb_003680_180 Hb_003680_180 Hb_001123_330--Hb_003680_180 Hb_001123_330--Hb_003185_040 Hb_001123_330--Hb_007474_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0151436 1.0671 1.75759 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0260496 0.0379663 0.0871391

CAGE analysis