Hb_003057_010

Information

Type -
Description -
Location Contig3057: 5813-9089
Sequence    

Annotation

kegg
ID rcu:RCOM_1068440
description hypothetical protein
nr
ID KDP46155.1
description hypothetical protein JCGZ_06666 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06666 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32283: 6313-6576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_010 0.0 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
2 Hb_000631_070 0.1680270323 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
3 Hb_002131_030 0.17362267 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
4 Hb_001595_080 0.1767697586 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000230_030 0.1875174429 - - hypothetical protein B456_013G2021001, partial [Gossypium raimondii]
6 Hb_000703_270 0.1926952184 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
7 Hb_002304_070 0.1971300465 - - -
8 Hb_001221_340 0.2033609203 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
9 Hb_000256_200 0.2062992094 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000286_200 0.206572782 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
11 Hb_000197_220 0.2093284614 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
12 Hb_001824_090 0.211330771 - - -
13 Hb_002400_150 0.2141475869 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
14 Hb_000635_260 0.2146896731 - - PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
15 Hb_000159_130 0.2152391276 - - RNA binding protein, putative [Ricinus communis]
16 Hb_001117_200 0.2162846137 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
17 Hb_000203_140 0.2177695776 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
18 Hb_000914_100 0.2228077373 - - unknown [Glycine max]
19 Hb_052764_110 0.2246463558 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
20 Hb_003544_010 0.2247458941 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003057_010 Hb_003057_010 Hb_000631_070 Hb_000631_070 Hb_003057_010--Hb_000631_070 Hb_002131_030 Hb_002131_030 Hb_003057_010--Hb_002131_030 Hb_001595_080 Hb_001595_080 Hb_003057_010--Hb_001595_080 Hb_000230_030 Hb_000230_030 Hb_003057_010--Hb_000230_030 Hb_000703_270 Hb_000703_270 Hb_003057_010--Hb_000703_270 Hb_002304_070 Hb_002304_070 Hb_003057_010--Hb_002304_070 Hb_042202_030 Hb_042202_030 Hb_000631_070--Hb_042202_030 Hb_004411_060 Hb_004411_060 Hb_000631_070--Hb_004411_060 Hb_002338_050 Hb_002338_050 Hb_000631_070--Hb_002338_050 Hb_000631_070--Hb_002304_070 Hb_019053_030 Hb_019053_030 Hb_000631_070--Hb_019053_030 Hb_002814_070 Hb_002814_070 Hb_000631_070--Hb_002814_070 Hb_000197_220 Hb_000197_220 Hb_002131_030--Hb_000197_220 Hb_000203_140 Hb_000203_140 Hb_002131_030--Hb_000203_140 Hb_100886_010 Hb_100886_010 Hb_002131_030--Hb_100886_010 Hb_002131_030--Hb_002338_050 Hb_001221_340 Hb_001221_340 Hb_002131_030--Hb_001221_340 Hb_000510_240 Hb_000510_240 Hb_002131_030--Hb_000510_240 Hb_002518_120 Hb_002518_120 Hb_001595_080--Hb_002518_120 Hb_032920_050 Hb_032920_050 Hb_001595_080--Hb_032920_050 Hb_003994_110 Hb_003994_110 Hb_001595_080--Hb_003994_110 Hb_001595_080--Hb_002304_070 Hb_000256_200 Hb_000256_200 Hb_001595_080--Hb_000256_200 Hb_001951_180 Hb_001951_180 Hb_001595_080--Hb_001951_180 Hb_000635_260 Hb_000635_260 Hb_000230_030--Hb_000635_260 Hb_000574_460 Hb_000574_460 Hb_000230_030--Hb_000574_460 Hb_000230_030--Hb_002131_030 Hb_003124_020 Hb_003124_020 Hb_000230_030--Hb_003124_020 Hb_132998_010 Hb_132998_010 Hb_000230_030--Hb_132998_010 Hb_000270_290 Hb_000270_290 Hb_000703_270--Hb_000270_290 Hb_000931_010 Hb_000931_010 Hb_000703_270--Hb_000931_010 Hb_000703_270--Hb_000256_200 Hb_032258_030 Hb_032258_030 Hb_000703_270--Hb_032258_030 Hb_002811_130 Hb_002811_130 Hb_000703_270--Hb_002811_130 Hb_000753_190 Hb_000753_190 Hb_000703_270--Hb_000753_190 Hb_003467_030 Hb_003467_030 Hb_002304_070--Hb_003467_030 Hb_001010_070 Hb_001010_070 Hb_002304_070--Hb_001010_070 Hb_011386_020 Hb_011386_020 Hb_002304_070--Hb_011386_020 Hb_002304_070--Hb_002338_050 Hb_007023_030 Hb_007023_030 Hb_002304_070--Hb_007023_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0894748 0.0428734 0.325428 0.288825 0.581723 0.67188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04393 0.928535 0.473996 1.79031 2.11297

CAGE analysis