Hb_003057_040

Information

Type -
Description -
Location Contig3057: 15381-16796
Sequence    

Annotation

kegg
ID vvi:100247965
description salt stress-induced hydrophobic peptide ESI3
nr
ID XP_002278351.2
description PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
swissprot
ID Q9ARD5
description Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1
trembl
ID F6HNK1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03650 PE=4 SV=1
Gene Ontology
ID GO:0016021
description low temperature-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_040 0.0 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
2 Hb_023714_010 0.0433754903 - - hypothetical protein B456_007G377100 [Gossypium raimondii]
3 Hb_006275_040 0.0818757464 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
4 Hb_007007_020 0.1118658878 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001300_060 0.1232190517 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
6 Hb_005144_140 0.1239632444 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002413_030 0.1254747847 - - sulfate transporter, putative [Ricinus communis]
8 Hb_000917_070 0.1282791313 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001091_010 0.1322941268 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
10 Hb_000329_570 0.1346796753 - - -
11 Hb_017226_020 0.1374366937 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
12 Hb_034507_020 0.137454753 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_005656_020 0.1386094969 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
14 Hb_001424_050 0.1388082762 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
15 Hb_175976_020 0.1397610917 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
16 Hb_000996_090 0.1402415676 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
17 Hb_142461_010 0.1413647815 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_099777_010 0.142807769 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
19 Hb_082733_010 0.1440239861 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
20 Hb_004634_010 0.1446458965 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]

Gene co-expression network

sample Hb_003057_040 Hb_003057_040 Hb_023714_010 Hb_023714_010 Hb_003057_040--Hb_023714_010 Hb_006275_040 Hb_006275_040 Hb_003057_040--Hb_006275_040 Hb_007007_020 Hb_007007_020 Hb_003057_040--Hb_007007_020 Hb_001300_060 Hb_001300_060 Hb_003057_040--Hb_001300_060 Hb_005144_140 Hb_005144_140 Hb_003057_040--Hb_005144_140 Hb_002413_030 Hb_002413_030 Hb_003057_040--Hb_002413_030 Hb_023714_010--Hb_006275_040 Hb_000329_570 Hb_000329_570 Hb_023714_010--Hb_000329_570 Hb_023714_010--Hb_001300_060 Hb_023714_010--Hb_002413_030 Hb_023714_010--Hb_007007_020 Hb_006275_040--Hb_001300_060 Hb_006275_040--Hb_005144_140 Hb_000917_070 Hb_000917_070 Hb_006275_040--Hb_000917_070 Hb_010308_010 Hb_010308_010 Hb_006275_040--Hb_010308_010 Hb_007007_020--Hb_002413_030 Hb_082733_010 Hb_082733_010 Hb_007007_020--Hb_082733_010 Hb_060236_010 Hb_060236_010 Hb_007007_020--Hb_060236_010 Hb_006326_020 Hb_006326_020 Hb_007007_020--Hb_006326_020 Hb_001091_010 Hb_001091_010 Hb_007007_020--Hb_001091_010 Hb_001300_060--Hb_010308_010 Hb_000496_080 Hb_000496_080 Hb_001300_060--Hb_000496_080 Hb_004330_050 Hb_004330_050 Hb_001300_060--Hb_004330_050 Hb_001300_060--Hb_000329_570 Hb_020112_010 Hb_020112_010 Hb_001300_060--Hb_020112_010 Hb_005144_140--Hb_000917_070 Hb_004102_150 Hb_004102_150 Hb_005144_140--Hb_004102_150 Hb_000935_060 Hb_000935_060 Hb_005144_140--Hb_000935_060 Hb_073870_010 Hb_073870_010 Hb_005144_140--Hb_073870_010 Hb_005348_020 Hb_005348_020 Hb_005144_140--Hb_005348_020 Hb_002413_030--Hb_082733_010 Hb_000046_250 Hb_000046_250 Hb_002413_030--Hb_000046_250 Hb_041063_010 Hb_041063_010 Hb_002413_030--Hb_041063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.110608 2.11521 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.742571 0

CAGE analysis