Hb_003057_050

Information

Type -
Description -
Location Contig3057: 17931-19783
Sequence    

Annotation

kegg
ID rcu:RCOM_1068300
description hypothetical protein
nr
ID XP_012073793.1
description PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32286: 19666-19773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_050 0.0 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
2 Hb_025246_010 0.088819363 - - -
3 Hb_004607_140 0.0966933389 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
4 Hb_017895_050 0.0975575446 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
5 Hb_004117_290 0.097611877 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000617_320 0.1063561302 - - 40S ribosomal protein S21B [Hevea brasiliensis]
7 Hb_000479_180 0.1092724563 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011931_050 0.1109696631 - - fk506-binding protein, putative [Ricinus communis]
9 Hb_004204_030 0.1130703502 - - unknown [Populus trichocarpa]
10 Hb_000417_110 0.1133271297 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
11 Hb_000316_110 0.1134130887 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
12 Hb_001623_240 0.1138789129 - - hypothetical protein VITISV_004933 [Vitis vinifera]
13 Hb_000163_200 0.1157251004 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
14 Hb_003058_070 0.1170097211 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
15 Hb_027892_060 0.1171091504 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
16 Hb_000798_030 0.1182248752 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
17 Hb_004545_160 0.1208153169 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_000365_380 0.1223088954 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003086_110 0.1225443128 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
20 Hb_000699_110 0.1229866708 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]

Gene co-expression network

sample Hb_003057_050 Hb_003057_050 Hb_025246_010 Hb_025246_010 Hb_003057_050--Hb_025246_010 Hb_004607_140 Hb_004607_140 Hb_003057_050--Hb_004607_140 Hb_017895_050 Hb_017895_050 Hb_003057_050--Hb_017895_050 Hb_004117_290 Hb_004117_290 Hb_003057_050--Hb_004117_290 Hb_000617_320 Hb_000617_320 Hb_003057_050--Hb_000617_320 Hb_000479_180 Hb_000479_180 Hb_003057_050--Hb_000479_180 Hb_003057_130 Hb_003057_130 Hb_025246_010--Hb_003057_130 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_000699_110 Hb_000699_110 Hb_025246_010--Hb_000699_110 Hb_000984_190 Hb_000984_190 Hb_025246_010--Hb_000984_190 Hb_000272_100 Hb_000272_100 Hb_004607_140--Hb_000272_100 Hb_157854_010 Hb_157854_010 Hb_004607_140--Hb_157854_010 Hb_004204_030 Hb_004204_030 Hb_004607_140--Hb_004204_030 Hb_000163_200 Hb_000163_200 Hb_004607_140--Hb_000163_200 Hb_006824_020 Hb_006824_020 Hb_004607_140--Hb_006824_020 Hb_000732_260 Hb_000732_260 Hb_004607_140--Hb_000732_260 Hb_027892_060 Hb_027892_060 Hb_017895_050--Hb_027892_060 Hb_003453_010 Hb_003453_010 Hb_017895_050--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_017895_050--Hb_001437_040 Hb_017895_050--Hb_004204_030 Hb_098709_010 Hb_098709_010 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_000365_380 Hb_000365_380 Hb_004117_290--Hb_000365_380 Hb_025193_050 Hb_025193_050 Hb_004117_290--Hb_025193_050 Hb_000316_110 Hb_000316_110 Hb_004117_290--Hb_000316_110 Hb_000928_240 Hb_000928_240 Hb_004117_290--Hb_000928_240 Hb_004595_020 Hb_004595_020 Hb_004117_290--Hb_004595_020 Hb_001584_070 Hb_001584_070 Hb_004117_290--Hb_001584_070 Hb_007166_050 Hb_007166_050 Hb_000617_320--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000617_320--Hb_001019_090 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_000479_180--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_000479_180--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_000479_180--Hb_000362_210 Hb_012515_010 Hb_012515_010 Hb_000479_180--Hb_012515_010 Hb_000634_050 Hb_000634_050 Hb_000479_180--Hb_000634_050 Hb_000061_330 Hb_000061_330 Hb_000479_180--Hb_000061_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3341 6.15167 9.73429 5.34385 34.9577 41.4793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.9967 48.3608 15.1429 10.3412 4.05856

CAGE analysis