Hb_003057_060

Information

Type -
Description -
Location Contig3057: 19948-32893
Sequence    

Annotation

kegg
ID rcu:RCOM_1068280
description hypothetical protein
nr
ID XP_002523898.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54TH4
description Golgi to ER traffic protein 4 homolog OS=Dictyostelium discoideum GN=DDB_G0281815 PE=3 SV=1
trembl
ID B9SD29
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1068280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32287: 20072-32658 , PASA_asmbl_32288: 29309-29713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_013575_010 0.0459357458 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
3 Hb_002681_100 0.0539627595 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
4 Hb_000666_100 0.0582576084 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
5 Hb_000948_230 0.0625125093 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_161574_020 0.0743919318 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
7 Hb_004627_040 0.0747926169 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
8 Hb_008246_060 0.0754076082 - - hypothetical protein F383_01577 [Gossypium arboreum]
9 Hb_002641_060 0.0755557926 - - prefoldin subunit, putative [Ricinus communis]
10 Hb_017895_040 0.0759452364 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
11 Hb_001511_060 0.0777692849 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
12 Hb_001278_100 0.0795154893 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
13 Hb_000220_100 0.0796866092 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
14 Hb_000733_200 0.0818193399 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
15 Hb_004109_220 0.0820816205 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
16 Hb_006573_190 0.0823324939 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
17 Hb_003994_230 0.0830761168 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
18 Hb_024439_010 0.0841037312 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
19 Hb_000260_350 0.0848751228 - - conserved hypothetical protein [Ricinus communis]
20 Hb_027380_060 0.0850021659 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003057_060 Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_003057_060--Hb_013575_010 Hb_002681_100 Hb_002681_100 Hb_003057_060--Hb_002681_100 Hb_000666_100 Hb_000666_100 Hb_003057_060--Hb_000666_100 Hb_000948_230 Hb_000948_230 Hb_003057_060--Hb_000948_230 Hb_161574_020 Hb_161574_020 Hb_003057_060--Hb_161574_020 Hb_004627_040 Hb_004627_040 Hb_003057_060--Hb_004627_040 Hb_002641_060 Hb_002641_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_013575_010--Hb_000666_100 Hb_013575_010--Hb_002681_100 Hb_004058_030 Hb_004058_030 Hb_002681_100--Hb_004058_030 Hb_001511_060 Hb_001511_060 Hb_002681_100--Hb_001511_060 Hb_003304_020 Hb_003304_020 Hb_002681_100--Hb_003304_020 Hb_006573_190 Hb_006573_190 Hb_002681_100--Hb_006573_190 Hb_004545_110 Hb_004545_110 Hb_000666_100--Hb_004545_110 Hb_008616_050 Hb_008616_050 Hb_000666_100--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_000666_100--Hb_000200_020 Hb_000666_100--Hb_002641_060 Hb_003994_230 Hb_003994_230 Hb_000948_230--Hb_003994_230 Hb_000948_230--Hb_013575_010 Hb_004990_010 Hb_004990_010 Hb_000948_230--Hb_004990_010 Hb_000720_040 Hb_000720_040 Hb_000948_230--Hb_000720_040 Hb_000948_230--Hb_001511_060 Hb_007878_010 Hb_007878_010 Hb_161574_020--Hb_007878_010 Hb_000270_310 Hb_000270_310 Hb_161574_020--Hb_000270_310 Hb_002171_060 Hb_002171_060 Hb_161574_020--Hb_002171_060 Hb_161574_020--Hb_002641_060 Hb_161574_020--Hb_013575_010 Hb_001278_100 Hb_001278_100 Hb_161574_020--Hb_001278_100 Hb_006618_120 Hb_006618_120 Hb_004627_040--Hb_006618_120 Hb_004627_040--Hb_013575_010 Hb_030736_020 Hb_030736_020 Hb_004627_040--Hb_030736_020 Hb_000300_630 Hb_000300_630 Hb_004627_040--Hb_000300_630 Hb_004627_040--Hb_004990_010 Hb_008246_060 Hb_008246_060 Hb_004627_040--Hb_008246_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0542 16.3959 29.5357 40.6828 22.3723 16.6885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2699 36.0203 28.2976 20.3989 20.3644

CAGE analysis