Hb_003057_080

Information

Type transcription factor
Description TF Family: LOB
Location Contig3057: 59860-61840
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04350g
description POPTRDRAFT_419520; hypothetical protein
nr
ID XP_012073862.1
description PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q9LQR0
description LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1
trembl
ID A0A067LNW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06675 PE=4 SV=1
Gene Ontology
ID GO:0004088
description lob domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_080 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
2 Hb_000045_230 0.0939763356 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
3 Hb_002311_240 0.1234793845 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
4 Hb_000019_220 0.1298630768 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
5 Hb_000347_550 0.1301252368 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
6 Hb_080225_010 0.1344494749 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
7 Hb_011283_010 0.1446314664 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
8 Hb_001699_240 0.1469607196 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
9 Hb_000500_110 0.1550616827 - - Blue copper protein precursor, putative [Ricinus communis]
10 Hb_002805_230 0.1565876078 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
11 Hb_002818_080 0.1571581008 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
12 Hb_005000_310 0.1580104405 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
13 Hb_000712_070 0.1636725889 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004037_010 0.1642922146 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
15 Hb_178389_020 0.1652612799 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
16 Hb_007527_020 0.1660546887 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
17 Hb_001250_140 0.168385996 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
18 Hb_000300_450 0.1687829373 - - PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]
19 Hb_004693_010 0.1692826457 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
20 Hb_007532_050 0.1693024441 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003057_080 Hb_003057_080 Hb_000045_230 Hb_000045_230 Hb_003057_080--Hb_000045_230 Hb_002311_240 Hb_002311_240 Hb_003057_080--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_003057_080--Hb_000019_220 Hb_000347_550 Hb_000347_550 Hb_003057_080--Hb_000347_550 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_011283_010 Hb_011283_010 Hb_003057_080--Hb_011283_010 Hb_000045_230--Hb_000019_220 Hb_004037_010 Hb_004037_010 Hb_000045_230--Hb_004037_010 Hb_000045_230--Hb_011283_010 Hb_001699_240 Hb_001699_240 Hb_000045_230--Hb_001699_240 Hb_001165_040 Hb_001165_040 Hb_000045_230--Hb_001165_040 Hb_010647_010 Hb_010647_010 Hb_002311_240--Hb_010647_010 Hb_002311_240--Hb_000019_220 Hb_001250_140 Hb_001250_140 Hb_002311_240--Hb_001250_140 Hb_005000_310 Hb_005000_310 Hb_002311_240--Hb_005000_310 Hb_002311_240--Hb_000347_550 Hb_000019_220--Hb_005000_310 Hb_000019_220--Hb_010647_010 Hb_002818_080 Hb_002818_080 Hb_000019_220--Hb_002818_080 Hb_004195_240 Hb_004195_240 Hb_000347_550--Hb_004195_240 Hb_000300_450 Hb_000300_450 Hb_000347_550--Hb_000300_450 Hb_148435_010 Hb_148435_010 Hb_000347_550--Hb_148435_010 Hb_148914_010 Hb_148914_010 Hb_000347_550--Hb_148914_010 Hb_010407_120 Hb_010407_120 Hb_000347_550--Hb_010407_120 Hb_000256_100 Hb_000256_100 Hb_080225_010--Hb_000256_100 Hb_080225_010--Hb_000347_550 Hb_000614_180 Hb_000614_180 Hb_080225_010--Hb_000614_180 Hb_000086_730 Hb_000086_730 Hb_080225_010--Hb_000086_730 Hb_005000_040 Hb_005000_040 Hb_080225_010--Hb_005000_040 Hb_045992_010 Hb_045992_010 Hb_011283_010--Hb_045992_010 Hb_000120_440 Hb_000120_440 Hb_011283_010--Hb_000120_440 Hb_000005_270 Hb_000005_270 Hb_011283_010--Hb_000005_270 Hb_009545_040 Hb_009545_040 Hb_011283_010--Hb_009545_040 Hb_011283_010--Hb_001165_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.35765 0.149715 0.677842 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.715638 0 13.1738 0.0813461

CAGE analysis