Hb_003057_090

Information

Type -
Description -
Location Contig3057: 139191-144198
Sequence    

Annotation

kegg
ID rcu:RCOM_1399280
description ATP synthase D chain, mitochondrial, putative (EC:3.6.3.14)
nr
ID XP_002526342.1
description ATP synthase D chain, mitochondrial, putative [Ricinus communis]
swissprot
ID Q9FT52
description ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3
trembl
ID B9SK23
description ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_1399280 PE=4 SV=1
Gene Ontology
ID GO:0000276
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32290: 139272-144233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_090 0.0 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
2 Hb_005054_060 0.0709190806 - - PREDICTED: syntaxin-81 [Jatropha curcas]
3 Hb_001195_480 0.0723658756 - - cop9 complex subunit, putative [Ricinus communis]
4 Hb_000815_320 0.0743577879 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
5 Hb_118419_010 0.0751944021 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
6 Hb_002168_060 0.0785740537 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
7 Hb_000580_090 0.0849374758 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
8 Hb_000465_090 0.0850745096 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
9 Hb_001328_040 0.0869793495 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
10 Hb_000261_160 0.08770559 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
11 Hb_002835_240 0.0885176007 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
12 Hb_000787_050 0.0894532188 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
13 Hb_002226_060 0.0897964537 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
14 Hb_000347_540 0.0908090396 - - protein binding protein, putative [Ricinus communis]
15 Hb_000329_200 0.0909922296 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
16 Hb_001105_030 0.0917177708 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
17 Hb_001604_060 0.0923731201 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
18 Hb_001157_020 0.0926327775 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
19 Hb_001534_120 0.092725928 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
20 Hb_001662_070 0.0928009106 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]

Gene co-expression network

sample Hb_003057_090 Hb_003057_090 Hb_005054_060 Hb_005054_060 Hb_003057_090--Hb_005054_060 Hb_001195_480 Hb_001195_480 Hb_003057_090--Hb_001195_480 Hb_000815_320 Hb_000815_320 Hb_003057_090--Hb_000815_320 Hb_118419_010 Hb_118419_010 Hb_003057_090--Hb_118419_010 Hb_002168_060 Hb_002168_060 Hb_003057_090--Hb_002168_060 Hb_000580_090 Hb_000580_090 Hb_003057_090--Hb_000580_090 Hb_005054_060--Hb_000815_320 Hb_004096_090 Hb_004096_090 Hb_005054_060--Hb_004096_090 Hb_009694_010 Hb_009694_010 Hb_005054_060--Hb_009694_010 Hb_001821_010 Hb_001821_010 Hb_005054_060--Hb_001821_010 Hb_000465_090 Hb_000465_090 Hb_005054_060--Hb_000465_090 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_001195_480--Hb_004096_090 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_004109_170 Hb_004109_170 Hb_118419_010--Hb_004109_170 Hb_000205_090 Hb_000205_090 Hb_118419_010--Hb_000205_090 Hb_118419_010--Hb_000580_090 Hb_004195_270 Hb_004195_270 Hb_118419_010--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_118419_010--Hb_001105_030 Hb_118419_010--Hb_000815_320 Hb_002168_060--Hb_000465_090 Hb_001012_010 Hb_001012_010 Hb_002168_060--Hb_001012_010 Hb_002168_060--Hb_005054_060 Hb_002477_300 Hb_002477_300 Hb_002168_060--Hb_002477_300 Hb_004619_080 Hb_004619_080 Hb_002168_060--Hb_004619_080 Hb_000580_090--Hb_004109_170 Hb_012286_030 Hb_012286_030 Hb_000580_090--Hb_012286_030 Hb_000580_090--Hb_000656_240 Hb_000580_090--Hb_004116_190 Hb_000580_090--Hb_001105_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.3136 12.0059 56.971 40.9309 51.6 33.6775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.6171 76.3685 46.9242 26.3754 28.9481

CAGE analysis