Hb_003057_100

Information

Type -
Description -
Location Contig3057: 145631-149325
Sequence    

Annotation

kegg
ID mdm:103410243
description S-adenosylmethionine mitochondrial carrier protein-like
nr
ID XP_008347202.1
description PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
swissprot
ID Q4V9P0
description S-adenosylmethionine mitochondrial carrier protein OS=Danio rerio GN=slc25a26 PE=2 SV=1
trembl
ID A0A0E0JBQ4
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0009941
description mitochondrial substrate carrier family protein c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32291: 145405-165187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_100 0.0 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
2 Hb_000032_270 0.0643318581 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
3 Hb_032202_190 0.0695280445 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
4 Hb_029866_090 0.0714985102 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
5 Hb_005305_080 0.0719622361 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
6 Hb_000510_130 0.0741867419 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
7 Hb_000059_330 0.0778106269 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
8 Hb_011883_010 0.0782436136 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
9 Hb_007691_030 0.0787736342 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
10 Hb_003092_040 0.079267561 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
11 Hb_010504_020 0.0801953301 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_000705_210 0.0808614051 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
13 Hb_020956_020 0.0812734601 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
14 Hb_093084_050 0.0831759129 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
15 Hb_000679_010 0.0832553087 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
16 Hb_001552_020 0.0834567338 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
17 Hb_000876_070 0.0837607298 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
18 Hb_003058_190 0.0847290621 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
19 Hb_017224_030 0.0847960118 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
20 Hb_001102_140 0.085937324 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003057_100 Hb_003057_100 Hb_000032_270 Hb_000032_270 Hb_003057_100--Hb_000032_270 Hb_032202_190 Hb_032202_190 Hb_003057_100--Hb_032202_190 Hb_029866_090 Hb_029866_090 Hb_003057_100--Hb_029866_090 Hb_005305_080 Hb_005305_080 Hb_003057_100--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_003057_100--Hb_000510_130 Hb_000059_330 Hb_000059_330 Hb_003057_100--Hb_000059_330 Hb_000680_160 Hb_000680_160 Hb_000032_270--Hb_000680_160 Hb_003428_030 Hb_003428_030 Hb_000032_270--Hb_003428_030 Hb_005846_040 Hb_005846_040 Hb_000032_270--Hb_005846_040 Hb_001758_100 Hb_001758_100 Hb_000032_270--Hb_001758_100 Hb_007691_030 Hb_007691_030 Hb_000032_270--Hb_007691_030 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_032202_190--Hb_005305_080 Hb_032202_190--Hb_007691_030 Hb_029866_090--Hb_000876_070 Hb_020956_020 Hb_020956_020 Hb_029866_090--Hb_020956_020 Hb_001552_020 Hb_001552_020 Hb_029866_090--Hb_001552_020 Hb_002739_100 Hb_002739_100 Hb_029866_090--Hb_002739_100 Hb_005539_350 Hb_005539_350 Hb_029866_090--Hb_005539_350 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_005305_080--Hb_005618_170 Hb_005305_080--Hb_000510_130 Hb_005305_080--Hb_004254_120 Hb_005305_080--Hb_000876_070 Hb_000510_130--Hb_020956_020 Hb_000510_130--Hb_010504_020 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_096563_010 Hb_096563_010 Hb_000059_330--Hb_096563_010 Hb_001259_090 Hb_001259_090 Hb_000059_330--Hb_001259_090 Hb_000059_330--Hb_003428_030 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4501 24.098 15.509 21.2863 27.7341 29.9378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.2229 34.7592 30.2357 16.293 15.4156

CAGE analysis