Hb_003057_110

Information

Type -
Description -
Location Contig3057: 160972-164532
Sequence    

Annotation

kegg
ID rcu:RCOM_0713440
description mitochondrial carrier protein, putative
nr
ID XP_012078540.1
description PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
swissprot
ID O18757
description Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1
trembl
ID A0A067KL53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14756 PE=3 SV=1
Gene Ontology
ID GO:0009941
description mitochondrial substrate carrier family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32291: 145405-165187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_110 0.0 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
2 Hb_001007_060 0.0667530618 - - Transcriptional corepressor SEUSS [Glycine soja]
3 Hb_008643_100 0.08106445 - - PREDICTED: uncharacterized protein LOC105629528 [Jatropha curcas]
4 Hb_004724_060 0.0823010461 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
5 Hb_001507_020 0.0850050844 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
6 Hb_001680_010 0.0857002226 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
7 Hb_000577_010 0.0858969322 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
8 Hb_001638_250 0.0869180402 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
9 Hb_011673_030 0.0869860149 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
10 Hb_003464_060 0.0878265836 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
11 Hb_000907_080 0.0904137607 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
12 Hb_002835_370 0.0906972327 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
13 Hb_004684_010 0.0910452286 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
14 Hb_001675_180 0.0917239758 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
15 Hb_175338_030 0.092600329 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
16 Hb_006922_100 0.0928737985 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
17 Hb_007757_110 0.0932961152 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
18 Hb_003058_190 0.0935183212 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
19 Hb_002025_020 0.0944168816 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
20 Hb_006915_050 0.0947159789 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003057_110 Hb_003057_110 Hb_001007_060 Hb_001007_060 Hb_003057_110--Hb_001007_060 Hb_008643_100 Hb_008643_100 Hb_003057_110--Hb_008643_100 Hb_004724_060 Hb_004724_060 Hb_003057_110--Hb_004724_060 Hb_001507_020 Hb_001507_020 Hb_003057_110--Hb_001507_020 Hb_001680_010 Hb_001680_010 Hb_003057_110--Hb_001680_010 Hb_000577_010 Hb_000577_010 Hb_003057_110--Hb_000577_010 Hb_003142_020 Hb_003142_020 Hb_001007_060--Hb_003142_020 Hb_004143_130 Hb_004143_130 Hb_001007_060--Hb_004143_130 Hb_000574_390 Hb_000574_390 Hb_001007_060--Hb_000574_390 Hb_003106_060 Hb_003106_060 Hb_001007_060--Hb_003106_060 Hb_006915_050 Hb_006915_050 Hb_001007_060--Hb_006915_050 Hb_011673_030 Hb_011673_030 Hb_008643_100--Hb_011673_030 Hb_000723_260 Hb_000723_260 Hb_008643_100--Hb_000723_260 Hb_002150_030 Hb_002150_030 Hb_008643_100--Hb_002150_030 Hb_005977_090 Hb_005977_090 Hb_008643_100--Hb_005977_090 Hb_001623_510 Hb_001623_510 Hb_008643_100--Hb_001623_510 Hb_001797_050 Hb_001797_050 Hb_004724_060--Hb_001797_050 Hb_004724_060--Hb_000577_010 Hb_007163_090 Hb_007163_090 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_008500_010 Hb_008500_010 Hb_004724_060--Hb_008500_010 Hb_123352_020 Hb_123352_020 Hb_004724_060--Hb_123352_020 Hb_001975_160 Hb_001975_160 Hb_001507_020--Hb_001975_160 Hb_002678_020 Hb_002678_020 Hb_001507_020--Hb_002678_020 Hb_004684_010 Hb_004684_010 Hb_001507_020--Hb_004684_010 Hb_001584_150 Hb_001584_150 Hb_001507_020--Hb_001584_150 Hb_003464_060 Hb_003464_060 Hb_001507_020--Hb_003464_060 Hb_007757_110 Hb_007757_110 Hb_001507_020--Hb_007757_110 Hb_005993_020 Hb_005993_020 Hb_001680_010--Hb_005993_020 Hb_005532_050 Hb_005532_050 Hb_001680_010--Hb_005532_050 Hb_002131_020 Hb_002131_020 Hb_001680_010--Hb_002131_020 Hb_001301_200 Hb_001301_200 Hb_001680_010--Hb_001301_200 Hb_002835_370 Hb_002835_370 Hb_001680_010--Hb_002835_370 Hb_001541_020 Hb_001541_020 Hb_001680_010--Hb_001541_020 Hb_000577_010--Hb_007163_090 Hb_001663_030 Hb_001663_030 Hb_000577_010--Hb_001663_030 Hb_000577_010--Hb_003464_060 Hb_001226_030 Hb_001226_030 Hb_000577_010--Hb_001226_030 Hb_000577_010--Hb_001797_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7356 20.0219 9.79272 12.2814 31.0575 31.801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5533 16.2427 35.9446 13.4731 19.8804

CAGE analysis