Hb_003057_120

Information

Type -
Description -
Location Contig3057: 173222-177856
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22510g
description POPTRDRAFT_227836; calmodulin-binding family protein
nr
ID XP_012078542.1
description PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067KL59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14761 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32292: 173340-177670 , PASA_asmbl_32293: 173450-177381
cDNA
(Sanger)
(ID:Location)		 015_J13.ab1: 176663-177670

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_120 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
2 Hb_011174_070 0.070507683 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
3 Hb_000387_080 0.0754119584 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
4 Hb_005357_150 0.0870536657 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001366_220 0.089750016 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001981_090 0.0919547225 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
7 Hb_000805_090 0.0974394708 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
8 Hb_002368_050 0.0983397838 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000696_110 0.1030916741 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
10 Hb_002357_040 0.1031575022 - - latex-abundant protein [Hevea brasiliensis]
11 Hb_006602_020 0.1035974712 - - unknown [Medicago truncatula]
12 Hb_000479_330 0.1046161012 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
13 Hb_000427_030 0.1080447347 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005779_100 0.1086607428 - - DNAJ [Theobroma cacao]
15 Hb_000057_060 0.1092677541 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
16 Hb_000152_140 0.1099146074 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
17 Hb_002903_070 0.1126049908 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
18 Hb_011224_080 0.1145939674 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
19 Hb_010174_120 0.1146344152 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
20 Hb_003638_030 0.1146685639 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]

Gene co-expression network

sample Hb_003057_120 Hb_003057_120 Hb_011174_070 Hb_011174_070 Hb_003057_120--Hb_011174_070 Hb_000387_080 Hb_000387_080 Hb_003057_120--Hb_000387_080 Hb_005357_150 Hb_005357_150 Hb_003057_120--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_003057_120--Hb_001366_220 Hb_001981_090 Hb_001981_090 Hb_003057_120--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_003057_120--Hb_000805_090 Hb_000427_030 Hb_000427_030 Hb_011174_070--Hb_000427_030 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_011174_070--Hb_000805_090 Hb_000025_480 Hb_000025_480 Hb_011174_070--Hb_000025_480 Hb_000387_080--Hb_001366_220 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_005357_150--Hb_001981_090 Hb_004108_050 Hb_004108_050 Hb_005357_150--Hb_004108_050 Hb_003151_050 Hb_003151_050 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_004800_160 Hb_004800_160 Hb_005357_150--Hb_004800_160 Hb_000809_040 Hb_000809_040 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_001981_090--Hb_002357_040 Hb_001981_090--Hb_000805_090 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_000805_090--Hb_002357_040 Hb_000805_090--Hb_000809_040 Hb_003861_080 Hb_003861_080 Hb_000805_090--Hb_003861_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.504 26.8431 17.3485 15.4048 151.919 151.169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
176.414 87.7441 212.967 27.5459 19.4427

CAGE analysis