Hb_003057_130

Information

Type -
Description -
Location Contig3057: 195794-207121
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_130 0.0 - - -
2 Hb_025246_010 0.0867234714 - - -
3 Hb_000788_120 0.0945139266 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
4 Hb_000175_040 0.1017152815 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
5 Hb_012305_060 0.1145319009 - - protein translocase, putative [Ricinus communis]
6 Hb_000284_010 0.1156953425 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
7 Hb_000005_030 0.1217858379 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
8 Hb_036369_010 0.1244228486 - - -
9 Hb_001248_020 0.1268663831 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
10 Hb_001999_120 0.1282887326 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
11 Hb_004545_160 0.1377326134 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
12 Hb_150299_030 0.1408728705 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000526_020 0.1419583055 - - thioredoxin-like family protein [Hevea brasiliensis]
14 Hb_115919_020 0.1442038238 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
15 Hb_007625_020 0.1457029254 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
16 Hb_000699_110 0.1476593224 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
17 Hb_027472_090 0.1482117695 - - -
18 Hb_000184_180 0.1498573829 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
19 Hb_001722_040 0.1508744298 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
20 Hb_001454_330 0.1509532482 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003057_130 Hb_003057_130 Hb_025246_010 Hb_025246_010 Hb_003057_130--Hb_025246_010 Hb_000788_120 Hb_000788_120 Hb_003057_130--Hb_000788_120 Hb_000175_040 Hb_000175_040 Hb_003057_130--Hb_000175_040 Hb_012305_060 Hb_012305_060 Hb_003057_130--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_003057_130--Hb_000284_010 Hb_000005_030 Hb_000005_030 Hb_003057_130--Hb_000005_030 Hb_003057_050 Hb_003057_050 Hb_025246_010--Hb_003057_050 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_000699_110 Hb_000699_110 Hb_025246_010--Hb_000699_110 Hb_000984_190 Hb_000984_190 Hb_025246_010--Hb_000984_190 Hb_000788_120--Hb_012305_060 Hb_000788_120--Hb_000175_040 Hb_027472_090 Hb_027472_090 Hb_000788_120--Hb_027472_090 Hb_000788_120--Hb_025246_010 Hb_001999_120 Hb_001999_120 Hb_000788_120--Hb_001999_120 Hb_000175_040--Hb_025246_010 Hb_000175_040--Hb_000699_110 Hb_007625_020 Hb_007625_020 Hb_000175_040--Hb_007625_020 Hb_004502_080 Hb_004502_080 Hb_000175_040--Hb_004502_080 Hb_004545_160 Hb_004545_160 Hb_012305_060--Hb_004545_160 Hb_000193_230 Hb_000193_230 Hb_012305_060--Hb_000193_230 Hb_012305_060--Hb_007625_020 Hb_000078_030 Hb_000078_030 Hb_012305_060--Hb_000078_030 Hb_012305_060--Hb_000284_010 Hb_007451_030 Hb_007451_030 Hb_012305_060--Hb_007451_030 Hb_115919_020 Hb_115919_020 Hb_000284_010--Hb_115919_020 Hb_000284_010--Hb_000078_030 Hb_005016_130 Hb_005016_130 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_002298_040 Hb_002298_040 Hb_000284_010--Hb_002298_040 Hb_000284_010--Hb_000193_230 Hb_000526_020 Hb_000526_020 Hb_000005_030--Hb_000526_020 Hb_006816_440 Hb_006816_440 Hb_000005_030--Hb_006816_440 Hb_003038_180 Hb_003038_180 Hb_000005_030--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_000005_030--Hb_000062_580 Hb_149683_010 Hb_149683_010 Hb_000005_030--Hb_149683_010 Hb_000184_180 Hb_000184_180 Hb_000005_030--Hb_000184_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74484 0.486271 0.176824 0.173828 2.20325 5.2027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.56854 6.63746 1.86161 0.663843 0.430931

CAGE analysis