Hb_003058_070

Information

Type -
Description -
Location Contig3058: 68221-70457
Sequence    

Annotation

kegg
ID tcc:TCM_041006
description Uncharacterized protein isoform 1
nr
ID XP_012065861.1
description PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L402
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22743 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32302: 47411-67475 , PASA_asmbl_32303: 68183-70405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_070 0.0 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
2 Hb_000417_110 0.0735702596 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
3 Hb_003001_060 0.0743671474 - - wound-responsive family protein [Populus trichocarpa]
4 Hb_002234_210 0.087525651 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
5 Hb_000190_060 0.0891549364 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
6 Hb_000365_380 0.0924420409 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000798_030 0.0928771873 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
8 Hb_001584_070 0.0952461743 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000483_160 0.0957906614 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
10 Hb_070986_010 0.0960089168 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
11 Hb_000057_070 0.0960331246 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
12 Hb_000526_150 0.0963423194 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
13 Hb_000634_050 0.0968922207 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
14 Hb_004117_290 0.0970219394 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001538_120 0.0979452478 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
16 Hb_001214_030 0.0981930694 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
17 Hb_003029_080 0.1004540361 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
18 Hb_001818_020 0.1035068753 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
19 Hb_000545_150 0.1070743197 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
20 Hb_002293_030 0.1073350624 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]

Gene co-expression network

sample Hb_003058_070 Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_003058_070--Hb_000417_110 Hb_003001_060 Hb_003001_060 Hb_003058_070--Hb_003001_060 Hb_002234_210 Hb_002234_210 Hb_003058_070--Hb_002234_210 Hb_000190_060 Hb_000190_060 Hb_003058_070--Hb_000190_060 Hb_000365_380 Hb_000365_380 Hb_003058_070--Hb_000365_380 Hb_000798_030 Hb_000798_030 Hb_003058_070--Hb_000798_030 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000417_110--Hb_000798_030 Hb_000417_110--Hb_003001_060 Hb_003878_190 Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_001369_650 Hb_001369_650 Hb_003001_060--Hb_001369_650 Hb_004958_050 Hb_004958_050 Hb_002234_210--Hb_004958_050 Hb_002234_210--Hb_000634_050 Hb_002234_210--Hb_000417_110 Hb_002234_210--Hb_000190_060 Hb_009252_130 Hb_009252_130 Hb_002234_210--Hb_009252_130 Hb_001214_030 Hb_001214_030 Hb_000190_060--Hb_001214_030 Hb_000190_060--Hb_009252_130 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_004117_290 Hb_004117_290 Hb_000365_380--Hb_004117_290 Hb_000365_380--Hb_001584_070 Hb_000317_340 Hb_000317_340 Hb_000365_380--Hb_000317_340 Hb_143629_230 Hb_143629_230 Hb_000365_380--Hb_143629_230 Hb_025193_050 Hb_025193_050 Hb_000365_380--Hb_025193_050 Hb_032202_090 Hb_032202_090 Hb_000365_380--Hb_032202_090 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000798_030--Hb_000634_050 Hb_000045_190 Hb_000045_190 Hb_000798_030--Hb_000045_190 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.703 12.1456 11.5944 10.2301 41.6915 40.6903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.258 86.7483 17.6993 10.8637 5.35183

CAGE analysis