Hb_003058_090

Information

Type -
Description -
Location Contig3058: 76226-76531
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28080g
description hypothetical protein
nr
ID XP_006369650.1
description hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GVF3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28080g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32308: 76690-76927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_090 0.0 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
2 Hb_000269_050 0.0459762971 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
3 Hb_007477_020 0.0760513957 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
4 Hb_002874_100 0.0929053383 - - cytochrome P450, putative [Ricinus communis]
5 Hb_007426_100 0.1018912144 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000296_030 0.1023269516 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
7 Hb_001104_290 0.109600275 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
8 Hb_000363_100 0.1105572246 - - -
9 Hb_093084_040 0.1132634507 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
10 Hb_000381_140 0.1163117917 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
11 Hb_106677_010 0.1163829581 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
12 Hb_033153_030 0.1176919813 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
13 Hb_003252_030 0.1185572937 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
14 Hb_000194_030 0.12024316 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
15 Hb_000479_100 0.1202480139 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
16 Hb_002853_010 0.1231076378 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000224_070 0.125289693 - - -
18 Hb_000366_070 0.1267622114 - - PREDICTED: protein NRT1/ PTR FAMILY 6.2 [Jatropha curcas]
19 Hb_002215_020 0.127548754 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
20 Hb_004926_010 0.1282000127 - - hypothetical protein JCGZ_27059 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_090 Hb_003058_090 Hb_000269_050 Hb_000269_050 Hb_003058_090--Hb_000269_050 Hb_007477_020 Hb_007477_020 Hb_003058_090--Hb_007477_020 Hb_002874_100 Hb_002874_100 Hb_003058_090--Hb_002874_100 Hb_007426_100 Hb_007426_100 Hb_003058_090--Hb_007426_100 Hb_000296_030 Hb_000296_030 Hb_003058_090--Hb_000296_030 Hb_001104_290 Hb_001104_290 Hb_003058_090--Hb_001104_290 Hb_000381_140 Hb_000381_140 Hb_000269_050--Hb_000381_140 Hb_000269_050--Hb_000296_030 Hb_000224_070 Hb_000224_070 Hb_000269_050--Hb_000224_070 Hb_000269_050--Hb_002874_100 Hb_000269_050--Hb_007426_100 Hb_000480_050 Hb_000480_050 Hb_007477_020--Hb_000480_050 Hb_033153_030 Hb_033153_030 Hb_007477_020--Hb_033153_030 Hb_002999_010 Hb_002999_010 Hb_007477_020--Hb_002999_010 Hb_007477_020--Hb_002874_100 Hb_005373_030 Hb_005373_030 Hb_007477_020--Hb_005373_030 Hb_002874_100--Hb_033153_030 Hb_002874_100--Hb_007426_100 Hb_000363_100 Hb_000363_100 Hb_002874_100--Hb_000363_100 Hb_002874_100--Hb_001104_290 Hb_000445_480 Hb_000445_480 Hb_002874_100--Hb_000445_480 Hb_003252_030 Hb_003252_030 Hb_002874_100--Hb_003252_030 Hb_007426_100--Hb_033153_030 Hb_000194_030 Hb_000194_030 Hb_007426_100--Hb_000194_030 Hb_007426_100--Hb_000445_480 Hb_001529_010 Hb_001529_010 Hb_007426_100--Hb_001529_010 Hb_002894_020 Hb_002894_020 Hb_007426_100--Hb_002894_020 Hb_000905_130 Hb_000905_130 Hb_000296_030--Hb_000905_130 Hb_000270_590 Hb_000270_590 Hb_000296_030--Hb_000270_590 Hb_000296_030--Hb_000224_070 Hb_001597_040 Hb_001597_040 Hb_000296_030--Hb_001597_040 Hb_002701_200 Hb_002701_200 Hb_000296_030--Hb_002701_200 Hb_001104_290--Hb_000363_100 Hb_001104_290--Hb_003252_030 Hb_011689_090 Hb_011689_090 Hb_001104_290--Hb_011689_090 Hb_003747_080 Hb_003747_080 Hb_001104_290--Hb_003747_080 Hb_116679_010 Hb_116679_010 Hb_001104_290--Hb_116679_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.179651 0.178404 7.4907 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.323727 0

CAGE analysis