Hb_003058_100

Information

Type -
Description -
Location Contig3058: 80809-88429
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07280g
description POPTRDRAFT_833174; hypothetical protein
nr
ID XP_012065860.1
description PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
swissprot
ID O81027
description Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2
trembl
ID A0A067LFA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22742 PE=4 SV=1
Gene Ontology
ID GO:0004419
description hydroxymethylglutaryl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32309: 80840-82786 , PASA_asmbl_32310: 81206-88314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_100 0.0 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
2 Hb_019654_020 0.0745902573 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
3 Hb_002837_040 0.0829163096 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_000645_070 0.0833220333 - - aldehyde dehydrogenase, putative [Ricinus communis]
5 Hb_022693_130 0.0906616284 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_000645_180 0.0913477878 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
7 Hb_010172_010 0.0916790159 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
8 Hb_008025_010 0.0933671832 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
9 Hb_011486_060 0.0944961595 - - conserved hypothetical protein [Ricinus communis]
10 Hb_068079_010 0.0973258703 - - -
11 Hb_000395_280 0.0977592931 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
12 Hb_000007_090 0.0998710316 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
13 Hb_000903_010 0.1001555849 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
14 Hb_002942_230 0.1008187543 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
15 Hb_008725_270 0.100891437 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
16 Hb_006829_060 0.1015543199 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
17 Hb_000358_210 0.1028014002 - - oligosaccharyl transferase, putative [Ricinus communis]
18 Hb_014361_060 0.1034528551 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
19 Hb_000007_060 0.1038438707 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
20 Hb_000367_180 0.104143338 - - Heparanase-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_003058_100 Hb_003058_100 Hb_019654_020 Hb_019654_020 Hb_003058_100--Hb_019654_020 Hb_002837_040 Hb_002837_040 Hb_003058_100--Hb_002837_040 Hb_000645_070 Hb_000645_070 Hb_003058_100--Hb_000645_070 Hb_022693_130 Hb_022693_130 Hb_003058_100--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_003058_100--Hb_000645_180 Hb_010172_010 Hb_010172_010 Hb_003058_100--Hb_010172_010 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_015884_020 Hb_015884_020 Hb_019654_020--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_019654_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_002837_040--Hb_000645_070 Hb_000903_010 Hb_000903_010 Hb_002837_040--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002837_040--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_002837_040--Hb_002749_080 Hb_006588_160 Hb_006588_160 Hb_002837_040--Hb_006588_160 Hb_000645_070--Hb_000154_050 Hb_000645_070--Hb_002749_080 Hb_000645_070--Hb_000903_010 Hb_002871_140 Hb_002871_140 Hb_000645_070--Hb_002871_140 Hb_160271_010 Hb_160271_010 Hb_022693_130--Hb_160271_010 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_000645_180--Hb_068079_010 Hb_012779_080 Hb_012779_080 Hb_000645_180--Hb_012779_080 Hb_000645_180--Hb_000108_020 Hb_070624_010 Hb_070624_010 Hb_000645_180--Hb_070624_010 Hb_000320_190 Hb_000320_190 Hb_000645_180--Hb_000320_190 Hb_010172_010--Hb_002837_040 Hb_010172_010--Hb_015884_020 Hb_001053_080 Hb_001053_080 Hb_010172_010--Hb_001053_080 Hb_000862_100 Hb_000862_100 Hb_010172_010--Hb_000862_100 Hb_003540_080 Hb_003540_080 Hb_010172_010--Hb_003540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.86003 6.34652 32.216 35.2825 12.7079 9.54174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.8715 7.80715 7.96901 16.1831 30.5435

CAGE analysis