Hb_003058_110

Information

Type -
Description -
Location Contig3058: 91611-115861
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09730g
description hypothetical protein
nr
ID XP_011008830.1
description PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
swissprot
ID C0HJB3
description Alpha-mannosidase OS=Canavalia ensiformis PE=1 SV=1
trembl
ID U5G4R2
description Alpha-mannosidase OS=Populus trichocarpa GN=POPTR_0007s09730g PE=3 SV=1
Gene Ontology
ID GO:0004553
description alpha-mannosidase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32312: 91666-97458 , PASA_asmbl_32314: 93926-94434 , PASA_asmbl_32315: 98666-109021 , PASA_asmbl_32316: 109566-112259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_110 0.0 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
2 Hb_000207_130 0.0825942413 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
3 Hb_007632_110 0.0862652304 - - chromatin regulatory protein sir2, putative [Ricinus communis]
4 Hb_000351_140 0.0882550149 - - PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X3 [Pyrus x bretschneideri]
5 Hb_002007_350 0.0900389012 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
6 Hb_001486_080 0.0960519603 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
7 Hb_016461_010 0.0960673253 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
8 Hb_000342_110 0.0967262978 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
9 Hb_000395_020 0.1014072445 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
10 Hb_000771_180 0.1031921937 - - polypyrimidine tract binding protein, putative [Ricinus communis]
11 Hb_007520_030 0.1032378154 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
12 Hb_011609_080 0.1033661844 - - uv excision repair protein rad23, putative [Ricinus communis]
13 Hb_008554_120 0.1034007546 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
14 Hb_002301_220 0.1038309144 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
15 Hb_007982_070 0.1045626672 - - PREDICTED: protein CPR-5 [Jatropha curcas]
16 Hb_002675_260 0.104733786 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
17 Hb_003020_110 0.1052028878 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
18 Hb_003020_010 0.1054185743 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
19 Hb_000310_080 0.1074342238 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
20 Hb_006355_010 0.1079101524 - - PREDICTED: protein NLRC3 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_110 Hb_003058_110 Hb_000207_130 Hb_000207_130 Hb_003058_110--Hb_000207_130 Hb_007632_110 Hb_007632_110 Hb_003058_110--Hb_007632_110 Hb_000351_140 Hb_000351_140 Hb_003058_110--Hb_000351_140 Hb_002007_350 Hb_002007_350 Hb_003058_110--Hb_002007_350 Hb_001486_080 Hb_001486_080 Hb_003058_110--Hb_001486_080 Hb_016461_010 Hb_016461_010 Hb_003058_110--Hb_016461_010 Hb_004055_150 Hb_004055_150 Hb_000207_130--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_000207_130--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_000207_130--Hb_000853_230 Hb_032208_040 Hb_032208_040 Hb_000207_130--Hb_032208_040 Hb_106552_050 Hb_106552_050 Hb_000207_130--Hb_106552_050 Hb_002078_020 Hb_002078_020 Hb_000207_130--Hb_002078_020 Hb_001105_010 Hb_001105_010 Hb_007632_110--Hb_001105_010 Hb_003467_010 Hb_003467_010 Hb_007632_110--Hb_003467_010 Hb_011942_080 Hb_011942_080 Hb_007632_110--Hb_011942_080 Hb_006355_010 Hb_006355_010 Hb_007632_110--Hb_006355_010 Hb_004450_060 Hb_004450_060 Hb_007632_110--Hb_004450_060 Hb_007632_110--Hb_000207_130 Hb_008554_120 Hb_008554_120 Hb_000351_140--Hb_008554_120 Hb_001102_080 Hb_001102_080 Hb_000351_140--Hb_001102_080 Hb_018790_070 Hb_018790_070 Hb_000351_140--Hb_018790_070 Hb_000351_140--Hb_000207_130 Hb_000270_460 Hb_000270_460 Hb_000351_140--Hb_000270_460 Hb_009265_080 Hb_009265_080 Hb_002007_350--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_002007_350--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_002007_350--Hb_004678_060 Hb_007590_080 Hb_007590_080 Hb_002007_350--Hb_007590_080 Hb_000803_300 Hb_000803_300 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160 Hb_000406_240 Hb_000406_240 Hb_001486_080--Hb_000406_240 Hb_002301_220 Hb_002301_220 Hb_001486_080--Hb_002301_220 Hb_007982_070 Hb_007982_070 Hb_001486_080--Hb_007982_070 Hb_001486_080--Hb_008554_120 Hb_005883_010 Hb_005883_010 Hb_001486_080--Hb_005883_010 Hb_134951_010 Hb_134951_010 Hb_001486_080--Hb_134951_010 Hb_000390_180 Hb_000390_180 Hb_016461_010--Hb_000390_180 Hb_003020_010 Hb_003020_010 Hb_016461_010--Hb_003020_010 Hb_000617_240 Hb_000617_240 Hb_016461_010--Hb_000617_240 Hb_000498_010 Hb_000498_010 Hb_016461_010--Hb_000498_010 Hb_011609_080 Hb_011609_080 Hb_016461_010--Hb_011609_080 Hb_001621_170 Hb_001621_170 Hb_016461_010--Hb_001621_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.2946 21.4121 25.1286 10.2651 44.4375 30.7386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2573 18.9817 19.9843 28.7168 10.1155

CAGE analysis