Hb_003058_120

Information

Type -
Description -
Location Contig3058: 118020-124170
Sequence    

Annotation

kegg
ID rcu:RCOM_0974240
description 26S proteasome non-atpase regulatory subunit, putative
nr
ID XP_012065849.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
swissprot
ID P55034
description 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana GN=RPN10 PE=1 SV=1
trembl
ID A0A067L7I7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22735 PE=4 SV=1
Gene Ontology
ID GO:0008540
description 26s proteasome non-atpase regulatory subunit 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32317: 118043-124172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_120 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
2 Hb_000853_150 0.0478295712 - - Fumarase 1 isoform 2 [Theobroma cacao]
3 Hb_005588_060 0.0526789706 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
4 Hb_023001_040 0.058019684 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
5 Hb_000392_420 0.0595936407 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
6 Hb_000167_010 0.060855721 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004157_050 0.0666216938 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
8 Hb_000076_220 0.0681012623 - - thioredoxin domain-containing protein, putative [Ricinus communis]
9 Hb_000778_010 0.0706846607 - - hypothetical protein [Bacillus subtilis]
10 Hb_004108_220 0.0721746108 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
11 Hb_011218_090 0.0726928795 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
12 Hb_149985_010 0.0735247528 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
13 Hb_000069_720 0.0755392001 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
14 Hb_002301_150 0.0756427387 - - Drought-responsive family protein [Theobroma cacao]
15 Hb_000665_140 0.0762578874 - - PREDICTED: protein MEMO1 [Jatropha curcas]
16 Hb_000260_470 0.0764359413 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
17 Hb_000663_060 0.076940508 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
18 Hb_000460_030 0.0775663551 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
19 Hb_001301_110 0.0782572039 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
20 Hb_000029_140 0.0782920339 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]

Gene co-expression network

sample Hb_003058_120 Hb_003058_120 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_005588_060 Hb_005588_060 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_000167_010 Hb_000167_010 Hb_003058_120--Hb_000167_010 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050 Hb_001218_030 Hb_001218_030 Hb_000853_150--Hb_001218_030 Hb_000853_150--Hb_005588_060 Hb_001828_150 Hb_001828_150 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_002936_010 Hb_002936_010 Hb_005588_060--Hb_002936_010 Hb_006570_080 Hb_006570_080 Hb_005588_060--Hb_006570_080 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_000173_280 Hb_000173_280 Hb_005588_060--Hb_000173_280 Hb_005588_060--Hb_023001_040 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_023001_040--Hb_000167_010 Hb_000778_010 Hb_000778_010 Hb_000392_420--Hb_000778_010 Hb_003861_060 Hb_003861_060 Hb_000392_420--Hb_003861_060 Hb_002007_080 Hb_002007_080 Hb_000392_420--Hb_002007_080 Hb_164390_010 Hb_164390_010 Hb_000392_420--Hb_164390_010 Hb_093458_040 Hb_093458_040 Hb_000392_420--Hb_093458_040 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_000069_720 Hb_000069_720 Hb_000167_010--Hb_000069_720 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150 Hb_001301_110 Hb_001301_110 Hb_004157_050--Hb_001301_110 Hb_004157_050--Hb_000069_720 Hb_000665_140 Hb_000665_140 Hb_004157_050--Hb_000665_140 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2086 24.6441 39.1922 48.5812 18.0242 19.8247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.565 39.1716 32.0123 46.2309 30.2295

CAGE analysis