Hb_003058_130

Information

Type -
Description -
Location Contig3058: 125065-129873
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07260g
description POPTRDRAFT_804407; hypothetical protein
nr
ID XP_012065839.1
description PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
swissprot
ID Q8WXB1
description Protein N-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2
trembl
ID B9HNI1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07260g PE=4 SV=1
Gene Ontology
ID GO:0016740
description protein n-lysine methyltransferase mettl21a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32320: 125150-126452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_130 0.0 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
2 Hb_003392_040 0.0362056758 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
3 Hb_011689_080 0.0578954661 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
4 Hb_033843_010 0.0651110295 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
5 Hb_000103_560 0.0663571964 - - ADP-ribosylation factor, putative [Ricinus communis]
6 Hb_002078_150 0.0674812133 - - protein with unknown function [Ricinus communis]
7 Hb_039837_010 0.0681837674 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
8 Hb_000815_040 0.0715307 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
9 Hb_000494_020 0.0715535241 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
10 Hb_001377_290 0.0725290381 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
11 Hb_010691_060 0.0761563817 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
12 Hb_001604_080 0.0767911702 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
13 Hb_007218_080 0.0775070431 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
14 Hb_004324_310 0.0779683526 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009557_070 0.0780515155 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003001_120 0.0781485441 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
17 Hb_000329_030 0.0783115835 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
18 Hb_002043_190 0.078318876 - - rwd domain-containing protein, putative [Ricinus communis]
19 Hb_000363_500 0.078776799 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
20 Hb_000465_430 0.0793720374 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_130 Hb_003058_130 Hb_003392_040 Hb_003392_040 Hb_003058_130--Hb_003392_040 Hb_011689_080 Hb_011689_080 Hb_003058_130--Hb_011689_080 Hb_033843_010 Hb_033843_010 Hb_003058_130--Hb_033843_010 Hb_000103_560 Hb_000103_560 Hb_003058_130--Hb_000103_560 Hb_002078_150 Hb_002078_150 Hb_003058_130--Hb_002078_150 Hb_039837_010 Hb_039837_010 Hb_003058_130--Hb_039837_010 Hb_000169_010 Hb_000169_010 Hb_003392_040--Hb_000169_010 Hb_003392_040--Hb_011689_080 Hb_000032_570 Hb_000032_570 Hb_003392_040--Hb_000032_570 Hb_001377_290 Hb_001377_290 Hb_003392_040--Hb_001377_290 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_000398_180 Hb_000398_180 Hb_011689_080--Hb_000398_180 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_011689_080--Hb_001377_290 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_001006_170 Hb_001006_170 Hb_033843_010--Hb_001006_170 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_033843_010--Hb_003392_040 Hb_063716_050 Hb_063716_050 Hb_000103_560--Hb_063716_050 Hb_000832_140 Hb_000832_140 Hb_000103_560--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_000103_560--Hb_001604_080 Hb_000815_040 Hb_000815_040 Hb_000103_560--Hb_000815_040 Hb_000103_560--Hb_002078_150 Hb_000529_190 Hb_000529_190 Hb_000103_560--Hb_000529_190 Hb_004128_190 Hb_004128_190 Hb_002078_150--Hb_004128_190 Hb_002078_150--Hb_000398_180 Hb_003847_080 Hb_003847_080 Hb_002078_150--Hb_003847_080 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060 Hb_002811_360 Hb_002811_360 Hb_039837_010--Hb_002811_360 Hb_009111_050 Hb_009111_050 Hb_039837_010--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_039837_010--Hb_001454_210 Hb_028872_140 Hb_028872_140 Hb_039837_010--Hb_028872_140 Hb_000321_070 Hb_000321_070 Hb_039837_010--Hb_000321_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3811 4.82833 6.15863 7.17053 11.728 18.1194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7451 15.5218 10.7007 8.16819 3.10504

CAGE analysis