Hb_003058_150

Information

Type -
Description -
Location Contig3058: 146775-148376
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01170g
description POPTRDRAFT_578149; gibberellin 3 beta-hydroxylase family protein
nr
ID XP_012078634.1
description PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
swissprot
ID O24648
description Gibberellin 3-beta-dioxygenase 1 OS=Pisum sativum GN=LE PE=1 SV=1
trembl
ID A0A067KKF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13219 PE=3 SV=1
Gene Ontology
ID GO:0016707
description gibberellin 3-beta-dioxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_150 0.0 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
2 Hb_005474_070 0.0268017916 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
3 Hb_003805_110 0.0381422633 - - PREDICTED: laccase-11-like [Jatropha curcas]
4 Hb_001140_110 0.039155604 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
5 Hb_000940_120 0.0400428371 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
6 Hb_003647_070 0.0459288989 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
7 Hb_007534_080 0.0486573479 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
8 Hb_002042_220 0.0498039252 - - Kinesin heavy chain, putative [Ricinus communis]
9 Hb_001097_110 0.0515139747 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_002010_040 0.0548283034 - - -
11 Hb_000007_290 0.0564642565 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
12 Hb_029584_020 0.0635195978 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001951_050 0.0648366213 - - chlorophyll A/B binding protein, putative [Ricinus communis]
14 Hb_000504_220 0.0652175474 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
15 Hb_000530_060 0.0662422407 - - -
16 Hb_004197_030 0.0666878125 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
17 Hb_000140_040 0.0701454848 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
18 Hb_077976_010 0.0708359541 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
19 Hb_001080_290 0.0748505181 - - PSI reaction center subunit II [Citrus sinensis]
20 Hb_042123_010 0.0758596612 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]

Gene co-expression network

sample Hb_003058_150 Hb_003058_150 Hb_005474_070 Hb_005474_070 Hb_003058_150--Hb_005474_070 Hb_003805_110 Hb_003805_110 Hb_003058_150--Hb_003805_110 Hb_001140_110 Hb_001140_110 Hb_003058_150--Hb_001140_110 Hb_000940_120 Hb_000940_120 Hb_003058_150--Hb_000940_120 Hb_003647_070 Hb_003647_070 Hb_003058_150--Hb_003647_070 Hb_007534_080 Hb_007534_080 Hb_003058_150--Hb_007534_080 Hb_005474_070--Hb_003647_070 Hb_002010_040 Hb_002010_040 Hb_005474_070--Hb_002010_040 Hb_000007_290 Hb_000007_290 Hb_005474_070--Hb_000007_290 Hb_002042_220 Hb_002042_220 Hb_005474_070--Hb_002042_220 Hb_005474_070--Hb_007534_080 Hb_029584_020 Hb_029584_020 Hb_003805_110--Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_003805_110--Hb_000530_060 Hb_003805_110--Hb_001140_110 Hb_001097_110 Hb_001097_110 Hb_003805_110--Hb_001097_110 Hb_081344_010 Hb_081344_010 Hb_003805_110--Hb_081344_010 Hb_001951_050 Hb_001951_050 Hb_001140_110--Hb_001951_050 Hb_001140_110--Hb_001097_110 Hb_001080_290 Hb_001080_290 Hb_001140_110--Hb_001080_290 Hb_001140_110--Hb_000940_120 Hb_004197_030 Hb_004197_030 Hb_000940_120--Hb_004197_030 Hb_000940_120--Hb_002042_220 Hb_000940_120--Hb_005474_070 Hb_000940_120--Hb_003647_070 Hb_003647_070--Hb_002010_040 Hb_003647_070--Hb_000007_290 Hb_045260_010 Hb_045260_010 Hb_003647_070--Hb_045260_010 Hb_003647_070--Hb_002042_220 Hb_003647_070--Hb_007534_080 Hb_007534_080--Hb_001097_110 Hb_000140_040 Hb_000140_040 Hb_007534_080--Hb_000140_040 Hb_007534_080--Hb_003805_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0161082 0.033793 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.158791

CAGE analysis