Hb_003058_190

Information

Type -
Description -
Location Contig3058: 177768-183067
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07210g
description POPTRDRAFT_804410; las1-like family protein
nr
ID XP_012065835.1
description PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
swissprot
ID A2BE28
description Ribosomal biogenesis protein LAS1L OS=Mus musculus GN=Las1l PE=1 SV=1
trembl
ID A0A067L429
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22729 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32330: 177855-178456 , PASA_asmbl_32331: 178546-178766 , PASA_asmbl_32332: 180128-180516 , PASA_asmbl_32333: 178898-180692 , PASA_asmbl_32334: 182125-182959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_190 0.0 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
2 Hb_000016_250 0.0604330464 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
3 Hb_011671_430 0.0605529454 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
4 Hb_000030_300 0.061689552 - - Thioredoxin, putative [Ricinus communis]
5 Hb_031527_040 0.0639366029 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
6 Hb_000096_070 0.0644582814 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
7 Hb_000061_460 0.0646681825 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
8 Hb_003158_010 0.0663388686 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
9 Hb_007691_030 0.0664655933 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
10 Hb_000011_200 0.0674470623 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
11 Hb_001006_140 0.0678563082 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
12 Hb_000152_380 0.0689703818 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
13 Hb_000038_170 0.070147483 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
14 Hb_007416_180 0.0707418431 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
15 Hb_004907_110 0.070972007 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
16 Hb_000780_230 0.0710922448 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
17 Hb_010618_010 0.0714472352 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_002835_370 0.0719304129 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
19 Hb_001595_030 0.0722484725 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
20 Hb_002739_100 0.0724309262 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_190 Hb_003058_190 Hb_000016_250 Hb_000016_250 Hb_003058_190--Hb_000016_250 Hb_011671_430 Hb_011671_430 Hb_003058_190--Hb_011671_430 Hb_000030_300 Hb_000030_300 Hb_003058_190--Hb_000030_300 Hb_031527_040 Hb_031527_040 Hb_003058_190--Hb_031527_040 Hb_000096_070 Hb_000096_070 Hb_003058_190--Hb_000096_070 Hb_000061_460 Hb_000061_460 Hb_003058_190--Hb_000061_460 Hb_000563_320 Hb_000563_320 Hb_000016_250--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_000016_250--Hb_005779_060 Hb_001157_040 Hb_001157_040 Hb_000016_250--Hb_001157_040 Hb_000016_250--Hb_000096_070 Hb_001242_060 Hb_001242_060 Hb_000016_250--Hb_001242_060 Hb_000016_250--Hb_031527_040 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_003175_010 Hb_003175_010 Hb_000030_300--Hb_003175_010 Hb_000030_300--Hb_001242_060 Hb_000808_270 Hb_000808_270 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280 Hb_031527_040--Hb_001242_060 Hb_031527_040--Hb_000563_320 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_031527_040--Hb_001157_040 Hb_000034_100 Hb_000034_100 Hb_000096_070--Hb_000034_100 Hb_002518_280 Hb_002518_280 Hb_000096_070--Hb_002518_280 Hb_000096_070--Hb_000563_320 Hb_002248_080 Hb_002248_080 Hb_000096_070--Hb_002248_080 Hb_000280_080 Hb_000280_080 Hb_000061_460--Hb_000280_080 Hb_005731_130 Hb_005731_130 Hb_000061_460--Hb_005731_130 Hb_000260_270 Hb_000260_270 Hb_000061_460--Hb_000260_270 Hb_089032_040 Hb_089032_040 Hb_000061_460--Hb_089032_040 Hb_004994_220 Hb_004994_220 Hb_000061_460--Hb_004994_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.32303 8.54979 5.36605 6.2924 11.7944 10.4218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.552 9.82853 12.3946 7.62463 5.37366

CAGE analysis