Hb_003058_220

Information

Type -
Description -
Location Contig3058: 195198-195572
Sequence    

Annotation

kegg
ID rcu:RCOM_0974800
description Pre-mRNA branch site protein p14, putative
nr
ID XP_002530840.1
description Pre-mRNA branch site protein p14, putative [Ricinus communis]
swissprot
ID Q9FMP4
description Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1
trembl
ID B9SXX1
description Pre-mRNA branch site protein p14, putative OS=Ricinus communis GN=RCOM_0974800 PE=4 SV=1
Gene Ontology
ID GO:0000166
description splicing factor 3b subunit 6-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32337: 195007-195787
cDNA
(Sanger)
(ID:Location)		 019_A07.ab1: 195133-195736 , 026_B23.ab1: 195133-195787 , 041_C16.ab1: 195007-195669 , 041_G06.ab1: 195133-195787 , 053_C10.ab1: 195134-195695

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_220 0.0 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
2 Hb_000199_070 0.0683585379 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005224_050 0.080274534 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
4 Hb_002701_050 0.0976483678 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
5 Hb_000419_130 0.0981790744 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
6 Hb_001247_350 0.0984731893 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
7 Hb_000645_190 0.1041996678 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
8 Hb_001610_130 0.1048751965 - - 40S ribosomal protein S30 [Medicago truncatula]
9 Hb_000395_240 0.1058715058 - - hypothetical protein CICLE_v10010039mg [Citrus clementina]
10 Hb_008847_020 0.1064781207 - - 40S ribosomal protein S17C [Hevea brasiliensis]
11 Hb_000134_020 0.1072257668 - - thioredoxin-like family protein [Hevea brasiliensis]
12 Hb_011161_050 0.1073783543 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
13 Hb_004807_060 0.108851572 - - -
14 Hb_000236_460 0.1105899026 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
15 Hb_017711_010 0.1106440612 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
16 Hb_004007_100 0.1148192346 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
17 Hb_000526_040 0.1158121461 - - 60S ribosomal protein L6, putative [Ricinus communis]
18 Hb_009554_010 0.1168921361 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
19 Hb_000193_350 0.1195782186 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
20 Hb_005496_030 0.1200545477 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]

Gene co-expression network

sample Hb_003058_220 Hb_003058_220 Hb_000199_070 Hb_000199_070 Hb_003058_220--Hb_000199_070 Hb_005224_050 Hb_005224_050 Hb_003058_220--Hb_005224_050 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000645_190 Hb_000645_190 Hb_003058_220--Hb_000645_190 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_000199_070--Hb_002701_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090 Hb_017711_010 Hb_017711_010 Hb_005224_050--Hb_017711_010 Hb_000193_350 Hb_000193_350 Hb_005224_050--Hb_000193_350 Hb_005224_050--Hb_000199_070 Hb_003687_020 Hb_003687_020 Hb_005224_050--Hb_003687_020 Hb_002293_030 Hb_002293_030 Hb_005224_050--Hb_002293_030 Hb_004007_100 Hb_004007_100 Hb_002701_050--Hb_004007_100 Hb_015175_030 Hb_015175_030 Hb_002701_050--Hb_015175_030 Hb_001242_110 Hb_001242_110 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_148209_080 Hb_148209_080 Hb_002701_050--Hb_148209_080 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_001610_130 Hb_001610_130 Hb_000419_130--Hb_001610_130 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000419_130--Hb_000199_070 Hb_002716_090 Hb_002716_090 Hb_001247_350--Hb_002716_090 Hb_005496_030 Hb_005496_030 Hb_001247_350--Hb_005496_030 Hb_001247_350--Hb_000526_040 Hb_000545_150 Hb_000545_150 Hb_001247_350--Hb_000545_150 Hb_000948_190 Hb_000948_190 Hb_001247_350--Hb_000948_190 Hb_032202_090 Hb_032202_090 Hb_001247_350--Hb_032202_090 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_000645_190--Hb_001769_100 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000134_020 Hb_000134_020 Hb_000645_190--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_000645_190--Hb_000236_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
212.275 80.5449 82.961 198.301 192.397 704.939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
627.597 1134.01 357.372 132.302 43.9646

CAGE analysis