Hb_003060_030

Information

Type -
Description -
Location Contig3060: 21298-22230
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06070g
description POPTRDRAFT_767978; hypothetical protein
nr
ID ADK13073.1
description conserved hypothetical protein 16 [Hevea brasiliensis]
swissprot
ID Q9LMM6
description Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1
trembl
ID D9J004
description Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32355: 21216-22329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003060_030 0.0 - - conserved hypothetical protein 16 [Hevea brasiliensis]
2 Hb_002983_030 0.1131884147 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
3 Hb_004297_040 0.1228153141 - - acyl CoA reductase [Hevea brasiliensis]
4 Hb_004453_140 0.1272189467 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
5 Hb_005908_040 0.1321923951 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
6 Hb_000078_010 0.1323189522 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
7 Hb_012395_210 0.1373660663 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000352_140 0.1373970391 - - -
9 Hb_000367_280 0.1397926113 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
10 Hb_005841_040 0.1451315178 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
11 Hb_001102_250 0.1467122144 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
12 Hb_000193_240 0.1508477665 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
13 Hb_007810_030 0.1526853253 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
14 Hb_002045_230 0.155601579 - - Ammonium transporter 2 [Theobroma cacao]
15 Hb_011245_020 0.1562203103 - - Ferrochelatase [Medicago truncatula]
16 Hb_001213_120 0.1564468483 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
17 Hb_015934_020 0.1564908231 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
18 Hb_002326_180 0.1573637447 - - Protein Z, putative [Ricinus communis]
19 Hb_002260_090 0.1583737425 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
20 Hb_008066_040 0.1595364197 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]

Gene co-expression network

sample Hb_003060_030 Hb_003060_030 Hb_002983_030 Hb_002983_030 Hb_003060_030--Hb_002983_030 Hb_004297_040 Hb_004297_040 Hb_003060_030--Hb_004297_040 Hb_004453_140 Hb_004453_140 Hb_003060_030--Hb_004453_140 Hb_005908_040 Hb_005908_040 Hb_003060_030--Hb_005908_040 Hb_000078_010 Hb_000078_010 Hb_003060_030--Hb_000078_010 Hb_012395_210 Hb_012395_210 Hb_003060_030--Hb_012395_210 Hb_002983_030--Hb_004453_140 Hb_000193_240 Hb_000193_240 Hb_002983_030--Hb_000193_240 Hb_096225_020 Hb_096225_020 Hb_002983_030--Hb_096225_020 Hb_014497_110 Hb_014497_110 Hb_002983_030--Hb_014497_110 Hb_001143_090 Hb_001143_090 Hb_002983_030--Hb_001143_090 Hb_000367_280 Hb_000367_280 Hb_004297_040--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_004297_040--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_004297_040--Hb_078633_010 Hb_005137_020 Hb_005137_020 Hb_004297_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_004297_040--Hb_001102_250 Hb_001268_080 Hb_001268_080 Hb_004297_040--Hb_001268_080 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_005908_040--Hb_005137_020 Hb_010172_100 Hb_010172_100 Hb_005908_040--Hb_010172_100 Hb_005908_040--Hb_001102_250 Hb_005908_040--Hb_004297_040 Hb_003095_070 Hb_003095_070 Hb_005908_040--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_005908_040--Hb_000544_110 Hb_007810_030 Hb_007810_030 Hb_000078_010--Hb_007810_030 Hb_000078_010--Hb_015934_020 Hb_000078_010--Hb_000367_280 Hb_000078_010--Hb_001213_120 Hb_111648_010 Hb_111648_010 Hb_000078_010--Hb_111648_010 Hb_000078_010--Hb_004297_040 Hb_012395_210--Hb_004297_040 Hb_012395_210--Hb_000078_010 Hb_012395_210--Hb_001213_120 Hb_012395_210--Hb_000367_280 Hb_012395_210--Hb_001102_250 Hb_005539_210 Hb_005539_210 Hb_012395_210--Hb_005539_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
135.893 5.89124 1.37597 5.24876 132.432 168.891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
301.938 733.11 495.272 44.1786 1.59281

CAGE analysis