Hb_003060_040

Information

Type transcription factor
Description TF Family: MIKC
Location Contig3060: 22745-26933
Sequence    

Annotation

kegg
ID pmum:103330718
description agamous-like MADS-box protein AGL15
nr
ID XP_012065634.1
description PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
swissprot
ID Q38847
description Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1
trembl
ID A0A067L5A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16894 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003060_040 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
2 Hb_000920_320 0.1424292831 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
3 Hb_091433_030 0.154694388 - - -
4 Hb_000270_620 0.1576340966 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
5 Hb_001433_100 0.1589066663 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
6 Hb_003226_240 0.161369143 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
7 Hb_003913_050 0.1668592993 - - 60S ribosomal protein L27B [Hevea brasiliensis]
8 Hb_032202_250 0.1692027161 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
9 Hb_001425_060 0.1722109409 - - conserved hypothetical protein [Ricinus communis]
10 Hb_183612_090 0.1757639489 - - -
11 Hb_002989_040 0.1763551907 - - hypothetical protein 1 [Hevea brasiliensis]
12 Hb_001143_070 0.1784441529 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
13 Hb_002478_020 0.1799390371 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
14 Hb_004159_050 0.1809794053 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001425_070 0.185111707 - - -
16 Hb_001396_090 0.1856127717 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
17 Hb_034482_040 0.1866196484 - - aspartate kinase, partial [Francisella tularensis]
18 Hb_000103_550 0.1881921181 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
19 Hb_027892_040 0.1884646285 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
20 Hb_000316_100 0.1954422371 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_003060_040 Hb_003060_040 Hb_000920_320 Hb_000920_320 Hb_003060_040--Hb_000920_320 Hb_091433_030 Hb_091433_030 Hb_003060_040--Hb_091433_030 Hb_000270_620 Hb_000270_620 Hb_003060_040--Hb_000270_620 Hb_001433_100 Hb_001433_100 Hb_003060_040--Hb_001433_100 Hb_003226_240 Hb_003226_240 Hb_003060_040--Hb_003226_240 Hb_003913_050 Hb_003913_050 Hb_003060_040--Hb_003913_050 Hb_000920_320--Hb_003913_050 Hb_001396_090 Hb_001396_090 Hb_000920_320--Hb_001396_090 Hb_000920_320--Hb_003226_240 Hb_002989_040 Hb_002989_040 Hb_000920_320--Hb_002989_040 Hb_000920_320--Hb_000270_620 Hb_001425_060 Hb_001425_060 Hb_091433_030--Hb_001425_060 Hb_001425_070 Hb_001425_070 Hb_091433_030--Hb_001425_070 Hb_091433_030--Hb_002989_040 Hb_023051_020 Hb_023051_020 Hb_091433_030--Hb_023051_020 Hb_000103_030 Hb_000103_030 Hb_091433_030--Hb_000103_030 Hb_000103_550 Hb_000103_550 Hb_000270_620--Hb_000103_550 Hb_000123_160 Hb_000123_160 Hb_000270_620--Hb_000123_160 Hb_000318_490 Hb_000318_490 Hb_000270_620--Hb_000318_490 Hb_004159_050 Hb_004159_050 Hb_000270_620--Hb_004159_050 Hb_004545_130 Hb_004545_130 Hb_000270_620--Hb_004545_130 Hb_001433_100--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_001433_100--Hb_034482_040 Hb_000300_210 Hb_000300_210 Hb_001433_100--Hb_000300_210 Hb_032202_250 Hb_032202_250 Hb_001433_100--Hb_032202_250 Hb_008066_030 Hb_008066_030 Hb_001433_100--Hb_008066_030 Hb_000329_660 Hb_000329_660 Hb_001433_100--Hb_000329_660 Hb_003226_240--Hb_002989_040 Hb_003226_240--Hb_034482_040 Hb_003226_240--Hb_023051_020 Hb_003226_240--Hb_032202_250 Hb_003913_050--Hb_001396_090 Hb_003913_050--Hb_000103_550 Hb_003913_050--Hb_003226_240 Hb_003913_050--Hb_004159_050 Hb_003913_050--Hb_000270_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0353089 0.118982 0.0550591 0 0.0331396 0.202029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14175 3.20559 1.02891 0.13046 0

CAGE analysis