Hb_003060_050

Information

Type -
Description -
Location Contig3060: 30567-33550
Sequence    

Annotation

kegg
ID vvi:100258533
description methyltransferase-like protein 13
nr
ID XP_012065635.1
description PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID D7TDM2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003060_050 0.0 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
2 Hb_097646_010 0.1872566498 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
3 Hb_003914_030 0.1876472924 - - -
4 Hb_003854_020 0.1930774577 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
5 Hb_022880_020 0.1975927852 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
6 Hb_003001_040 0.2052762848 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
7 Hb_001103_070 0.205315725 - - Patellin-3, putative [Ricinus communis]
8 Hb_000062_030 0.2068075302 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
9 Hb_144550_020 0.2146179649 - - -
10 Hb_100525_010 0.2185048607 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
11 Hb_007423_030 0.2188654451 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
12 Hb_006745_010 0.2198824796 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
13 Hb_000979_240 0.2249002144 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
14 Hb_179679_010 0.2259286734 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
15 Hb_001004_120 0.226439503 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
16 Hb_000123_030 0.2303934065 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
17 Hb_045870_010 0.2325692348 - - -
18 Hb_049958_010 0.2336593468 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_011164_010 0.2347489399 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
20 Hb_059641_010 0.2366369202 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_003060_050 Hb_003060_050 Hb_097646_010 Hb_097646_010 Hb_003060_050--Hb_097646_010 Hb_003914_030 Hb_003914_030 Hb_003060_050--Hb_003914_030 Hb_003854_020 Hb_003854_020 Hb_003060_050--Hb_003854_020 Hb_022880_020 Hb_022880_020 Hb_003060_050--Hb_022880_020 Hb_003001_040 Hb_003001_040 Hb_003060_050--Hb_003001_040 Hb_001103_070 Hb_001103_070 Hb_003060_050--Hb_001103_070 Hb_100525_010 Hb_100525_010 Hb_097646_010--Hb_100525_010 Hb_024698_010 Hb_024698_010 Hb_097646_010--Hb_024698_010 Hb_097646_010--Hb_003001_040 Hb_000056_010 Hb_000056_010 Hb_097646_010--Hb_000056_010 Hb_003376_260 Hb_003376_260 Hb_097646_010--Hb_003376_260 Hb_027380_230 Hb_027380_230 Hb_097646_010--Hb_027380_230 Hb_003096_040 Hb_003096_040 Hb_003914_030--Hb_003096_040 Hb_153161_010 Hb_153161_010 Hb_003914_030--Hb_153161_010 Hb_001817_130 Hb_001817_130 Hb_003914_030--Hb_001817_130 Hb_178127_010 Hb_178127_010 Hb_003914_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_003914_030--Hb_001565_020 Hb_059641_010 Hb_059641_010 Hb_003854_020--Hb_059641_010 Hb_000123_030 Hb_000123_030 Hb_003854_020--Hb_000123_030 Hb_009848_020 Hb_009848_020 Hb_003854_020--Hb_009848_020 Hb_000136_190 Hb_000136_190 Hb_003854_020--Hb_000136_190 Hb_144550_020 Hb_144550_020 Hb_003854_020--Hb_144550_020 Hb_022880_020--Hb_000123_030 Hb_004074_030 Hb_004074_030 Hb_022880_020--Hb_004074_030 Hb_000796_050 Hb_000796_050 Hb_022880_020--Hb_000796_050 Hb_001178_040 Hb_001178_040 Hb_022880_020--Hb_001178_040 Hb_001950_020 Hb_001950_020 Hb_022880_020--Hb_001950_020 Hb_020805_100 Hb_020805_100 Hb_003001_040--Hb_020805_100 Hb_003001_040--Hb_024698_010 Hb_000334_130 Hb_000334_130 Hb_003001_040--Hb_000334_130 Hb_000979_240 Hb_000979_240 Hb_003001_040--Hb_000979_240 Hb_000358_200 Hb_000358_200 Hb_003001_040--Hb_000358_200 Hb_000732_240 Hb_000732_240 Hb_001103_070--Hb_000732_240 Hb_001004_120 Hb_001004_120 Hb_001103_070--Hb_001004_120 Hb_000099_190 Hb_000099_190 Hb_001103_070--Hb_000099_190 Hb_145317_010 Hb_145317_010 Hb_001103_070--Hb_145317_010 Hb_160405_010 Hb_160405_010 Hb_001103_070--Hb_160405_010 Hb_003082_040 Hb_003082_040 Hb_001103_070--Hb_003082_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286634 0.744077 0.16302 0.536376 0.447221 0.302677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0757405 0.19004

CAGE analysis