Hb_003060_070

Information

Type -
Description -
Location Contig3060: 54651-56102
Sequence    

Annotation

kegg
ID rcu:RCOM_1185020
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.11.30)
nr
ID XP_002527952.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SV05
description Serine/threonine-protein kinase-like protein At3g51990 OS=Arabidopsis thaliana GN=At3g51990 PE=2 SV=1
trembl
ID B9SPN3
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_1185020 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase-like protein at3g51990

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32360: 54321-56531 , PASA_asmbl_32361: 55385-56531
cDNA
(Sanger)
(ID:Location)		 026_O06.ab1: 55385-56250

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003060_070 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000270_420 0.1018693597 - - actin binding protein, putative [Ricinus communis]
3 Hb_057183_040 0.1028305109 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
4 Hb_000025_480 0.1268162147 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
5 Hb_000571_070 0.1280816766 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
6 Hb_000789_190 0.1286543326 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
7 Hb_002067_160 0.1314706963 - - Protein MLO, putative [Ricinus communis]
8 Hb_001946_280 0.1320487008 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008453_150 0.1332139541 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
10 Hb_001140_200 0.1344425074 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
11 Hb_001476_100 0.1351311065 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002740_130 0.1368102949 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
13 Hb_000258_430 0.1409362694 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_000538_210 0.1410919439 - - ATP binding protein, putative [Ricinus communis]
15 Hb_162275_010 0.1415041375 - - -
16 Hb_000028_470 0.144496235 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
17 Hb_001673_120 0.1449416739 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
18 Hb_027751_020 0.1450224007 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
19 Hb_003106_010 0.1452498849 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_040996_010 0.1468983939 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003060_070 Hb_003060_070 Hb_000270_420 Hb_000270_420 Hb_003060_070--Hb_000270_420 Hb_057183_040 Hb_057183_040 Hb_003060_070--Hb_057183_040 Hb_000025_480 Hb_000025_480 Hb_003060_070--Hb_000025_480 Hb_000571_070 Hb_000571_070 Hb_003060_070--Hb_000571_070 Hb_000789_190 Hb_000789_190 Hb_003060_070--Hb_000789_190 Hb_002067_160 Hb_002067_160 Hb_003060_070--Hb_002067_160 Hb_000270_420--Hb_002067_160 Hb_000270_420--Hb_000571_070 Hb_005488_100 Hb_005488_100 Hb_000270_420--Hb_005488_100 Hb_001476_100 Hb_001476_100 Hb_000270_420--Hb_001476_100 Hb_002477_260 Hb_002477_260 Hb_000270_420--Hb_002477_260 Hb_008453_150 Hb_008453_150 Hb_057183_040--Hb_008453_150 Hb_000028_470 Hb_000028_470 Hb_057183_040--Hb_000028_470 Hb_001140_200 Hb_001140_200 Hb_057183_040--Hb_001140_200 Hb_001823_100 Hb_001823_100 Hb_057183_040--Hb_001823_100 Hb_000120_240 Hb_000120_240 Hb_057183_040--Hb_000120_240 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_027751_020 Hb_027751_020 Hb_000571_070--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_000571_070--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_000571_070--Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_010931_100 Hb_010931_100 Hb_000571_070--Hb_010931_100 Hb_002843_160 Hb_002843_160 Hb_000789_190--Hb_002843_160 Hb_000249_110 Hb_000249_110 Hb_000789_190--Hb_000249_110 Hb_014067_010 Hb_014067_010 Hb_000789_190--Hb_014067_010 Hb_000789_190--Hb_002609_260 Hb_000789_190--Hb_000571_070 Hb_002835_170 Hb_002835_170 Hb_000789_190--Hb_002835_170 Hb_000085_340 Hb_000085_340 Hb_002067_160--Hb_000085_340 Hb_002067_160--Hb_005488_100 Hb_004738_090 Hb_004738_090 Hb_002067_160--Hb_004738_090 Hb_007178_010 Hb_007178_010 Hb_002067_160--Hb_007178_010 Hb_026048_090 Hb_026048_090 Hb_002067_160--Hb_026048_090 Hb_002232_180 Hb_002232_180 Hb_002067_160--Hb_002232_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
438.485 16.7068 22.6754 30.5811 173.116 304.83
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
135.498 149.987 326.955 32.8716 45.2965

CAGE analysis