Hb_003060_090

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3060: 66990-97169
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID KDP27350.1
description hypothetical protein JCGZ_20174 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067K520
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20174 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32364: 70048-74719 , PASA_asmbl_32365: 79364-79649 , PASA_asmbl_32368: 94109-94525 , PASA_asmbl_32370: 95375-95782
cDNA
(Sanger)
(ID:Location)		 022_O16.ab1: 70048-70713

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003060_090 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
2 Hb_144744_010 0.0878792387 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
3 Hb_014834_060 0.0896803177 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
4 Hb_000123_350 0.092831942 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
5 Hb_011828_030 0.1025768784 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
6 Hb_004032_040 0.1030895516 - - unknown [Medicago truncatula]
7 Hb_000189_100 0.1045269276 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
8 Hb_004371_010 0.1089368952 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
9 Hb_000896_060 0.1117446581 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000094_320 0.1130016781 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
11 Hb_007054_040 0.1166904877 - - PREDICTED: protein RST1 [Jatropha curcas]
12 Hb_010487_020 0.1175553333 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
13 Hb_000735_160 0.1181163924 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
14 Hb_000105_040 0.1203300988 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
15 Hb_127599_010 0.1214901428 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
16 Hb_000836_020 0.1214919617 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
17 Hb_000526_060 0.1214983969 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
18 Hb_001699_280 0.122689433 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
19 Hb_001511_110 0.1232427517 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
20 Hb_000347_120 0.1232564867 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]

Gene co-expression network

sample Hb_003060_090 Hb_003060_090 Hb_144744_010 Hb_144744_010 Hb_003060_090--Hb_144744_010 Hb_014834_060 Hb_014834_060 Hb_003060_090--Hb_014834_060 Hb_000123_350 Hb_000123_350 Hb_003060_090--Hb_000123_350 Hb_011828_030 Hb_011828_030 Hb_003060_090--Hb_011828_030 Hb_004032_040 Hb_004032_040 Hb_003060_090--Hb_004032_040 Hb_000189_100 Hb_000189_100 Hb_003060_090--Hb_000189_100 Hb_009028_010 Hb_009028_010 Hb_144744_010--Hb_009028_010 Hb_000236_410 Hb_000236_410 Hb_144744_010--Hb_000236_410 Hb_001935_140 Hb_001935_140 Hb_144744_010--Hb_001935_140 Hb_004371_010 Hb_004371_010 Hb_144744_010--Hb_004371_010 Hb_000406_110 Hb_000406_110 Hb_144744_010--Hb_000406_110 Hb_000896_060 Hb_000896_060 Hb_014834_060--Hb_000896_060 Hb_005188_040 Hb_005188_040 Hb_014834_060--Hb_005188_040 Hb_024185_010 Hb_024185_010 Hb_014834_060--Hb_024185_010 Hb_000526_060 Hb_000526_060 Hb_014834_060--Hb_000526_060 Hb_000703_130 Hb_000703_130 Hb_014834_060--Hb_000703_130 Hb_000836_020 Hb_000836_020 Hb_014834_060--Hb_000836_020 Hb_000123_350--Hb_000896_060 Hb_002485_040 Hb_002485_040 Hb_000123_350--Hb_002485_040 Hb_000123_350--Hb_014834_060 Hb_000123_350--Hb_000526_060 Hb_012082_010 Hb_012082_010 Hb_000123_350--Hb_012082_010 Hb_001699_280 Hb_001699_280 Hb_011828_030--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_011828_030--Hb_000105_040 Hb_011947_050 Hb_011947_050 Hb_011828_030--Hb_011947_050 Hb_000069_410 Hb_000069_410 Hb_011828_030--Hb_000069_410 Hb_011828_030--Hb_000836_020 Hb_003581_170 Hb_003581_170 Hb_011828_030--Hb_003581_170 Hb_000703_200 Hb_000703_200 Hb_004032_040--Hb_000703_200 Hb_012368_100 Hb_012368_100 Hb_004032_040--Hb_012368_100 Hb_000094_320 Hb_000094_320 Hb_004032_040--Hb_000094_320 Hb_120470_010 Hb_120470_010 Hb_004032_040--Hb_120470_010 Hb_000117_070 Hb_000117_070 Hb_004032_040--Hb_000117_070 Hb_000574_420 Hb_000574_420 Hb_004032_040--Hb_000574_420 Hb_006663_040 Hb_006663_040 Hb_000189_100--Hb_006663_040 Hb_000327_280 Hb_000327_280 Hb_000189_100--Hb_000327_280 Hb_018133_050 Hb_018133_050 Hb_000189_100--Hb_018133_050 Hb_000832_320 Hb_000832_320 Hb_000189_100--Hb_000832_320 Hb_052764_060 Hb_052764_060 Hb_000189_100--Hb_052764_060 Hb_000061_510 Hb_000061_510 Hb_000189_100--Hb_000061_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.65756 2.90172 0.499801 0.514043 0.712228 0.986151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440304 0.380514 0.591463 1.21883 0.667722

CAGE analysis