Hb_003064_010

Information

Type -
Description -
Location Contig3064: 17249-19323
Sequence    

Annotation

kegg
ID tcc:TCM_029582
description Senescence-related gene 1
nr
ID XP_007025225.1
description Senescence-related gene 1 [Theobroma cacao]
swissprot
ID D4N502
description Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1
trembl
ID A0A061GFA9
description Senescence-related gene 1 OS=Theobroma cacao GN=TCM_029582 PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32380: 19105-19376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003064_010 0.0 - - Senescence-related gene 1 [Theobroma cacao]
2 Hb_000194_080 0.0785432431 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
3 Hb_000029_420 0.0930414359 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
4 Hb_004021_100 0.1047035506 - - -
5 Hb_001623_400 0.1107282881 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004055_080 0.1157696808 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_049677_010 0.1341085457 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_058526_010 0.1371757549 - - -
9 Hb_001473_100 0.1382244711 - - chalcone synthase 1 [Jatropha curcas]
10 Hb_111693_010 0.1427287781 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
11 Hb_111985_160 0.1469045357 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
12 Hb_002301_420 0.1483863664 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
13 Hb_004324_200 0.1521784782 - - PREDICTED: transcription factor TRY-like [Populus euphratica]
14 Hb_000993_020 0.1536577698 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
15 Hb_002042_200 0.1550116572 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_000540_030 0.1576189629 - - Chitinase 1 precursor, putative [Ricinus communis]
17 Hb_003786_060 0.1598104213 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
18 Hb_002809_020 0.1608284615 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
19 Hb_000086_730 0.161095252 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1-like [Jatropha curcas]
20 Hb_017491_040 0.1611131847 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]

Gene co-expression network

sample Hb_003064_010 Hb_003064_010 Hb_000194_080 Hb_000194_080 Hb_003064_010--Hb_000194_080 Hb_000029_420 Hb_000029_420 Hb_003064_010--Hb_000029_420 Hb_004021_100 Hb_004021_100 Hb_003064_010--Hb_004021_100 Hb_001623_400 Hb_001623_400 Hb_003064_010--Hb_001623_400 Hb_004055_080 Hb_004055_080 Hb_003064_010--Hb_004055_080 Hb_049677_010 Hb_049677_010 Hb_003064_010--Hb_049677_010 Hb_000194_080--Hb_000029_420 Hb_001473_100 Hb_001473_100 Hb_000194_080--Hb_001473_100 Hb_002809_020 Hb_002809_020 Hb_000194_080--Hb_002809_020 Hb_000815_280 Hb_000815_280 Hb_000194_080--Hb_000815_280 Hb_000086_730 Hb_000086_730 Hb_000194_080--Hb_000086_730 Hb_111985_160 Hb_111985_160 Hb_000029_420--Hb_111985_160 Hb_000029_420--Hb_004055_080 Hb_111693_010 Hb_111693_010 Hb_000029_420--Hb_111693_010 Hb_001377_480 Hb_001377_480 Hb_000029_420--Hb_001377_480 Hb_017491_040 Hb_017491_040 Hb_004021_100--Hb_017491_040 Hb_058526_010 Hb_058526_010 Hb_004021_100--Hb_058526_010 Hb_127743_030 Hb_127743_030 Hb_004021_100--Hb_127743_030 Hb_007432_050 Hb_007432_050 Hb_004021_100--Hb_007432_050 Hb_003166_040 Hb_003166_040 Hb_004021_100--Hb_003166_040 Hb_002042_200 Hb_002042_200 Hb_001623_400--Hb_002042_200 Hb_000347_230 Hb_000347_230 Hb_001623_400--Hb_000347_230 Hb_001623_400--Hb_004021_100 Hb_003734_120 Hb_003734_120 Hb_001623_400--Hb_003734_120 Hb_001623_400--Hb_017491_040 Hb_004055_080--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_004055_080--Hb_000220_170 Hb_004055_080--Hb_058526_010 Hb_004055_080--Hb_001473_100 Hb_005653_100 Hb_005653_100 Hb_004055_080--Hb_005653_100 Hb_009771_070 Hb_009771_070 Hb_049677_010--Hb_009771_070 Hb_049677_010--Hb_000194_080 Hb_049677_010--Hb_004055_080 Hb_049677_010--Hb_000029_420 Hb_049677_010--Hb_001473_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.114401 0.2124 0.270072 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.931491 0

CAGE analysis