Hb_003064_020

Information

Type -
Description -
Location Contig3064: 21802-24634
Sequence    

Annotation

kegg
ID vvi:100262414
description eukaryotic translation initiation factor 4E-1
nr
ID KDP21178.1
description hypothetical protein JCGZ_21649 [Jatropha curcas]
swissprot
ID P48599
description Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1
trembl
ID A0A067JEI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21649 PE=3 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 4e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32381: 21859-24721 , PASA_asmbl_32383: 22349-22783
cDNA
(Sanger)
(ID:Location)		 041_H04.ab1: 21865-24546 , 043_H15.ab1: 21865-24583 , 048_A02.ab1: 21865-24551 , 053_H14.ab1: 21865-24598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003064_020 0.0 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
2 Hb_008554_060 0.0617062224 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
3 Hb_011512_070 0.0823491333 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
4 Hb_002226_060 0.0838491116 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
5 Hb_003052_190 0.0925731748 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
6 Hb_000589_120 0.0930392973 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
7 Hb_003942_020 0.094898902 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
8 Hb_001691_140 0.0953648912 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
9 Hb_000656_240 0.0967294671 - - proteasome subunit alpha type, putative [Ricinus communis]
10 Hb_026527_050 0.098365663 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
11 Hb_000185_050 0.0985158938 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
12 Hb_000527_060 0.0988992221 - - Protein C20orf11, putative [Ricinus communis]
13 Hb_002811_170 0.0989620653 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
14 Hb_000264_210 0.1001186162 - - tfiih, polypeptide, putative [Ricinus communis]
15 Hb_000667_070 0.1015798444 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_001195_480 0.1020477596 - - cop9 complex subunit, putative [Ricinus communis]
17 Hb_000260_550 0.1031533947 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
18 Hb_001534_120 0.1035231519 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
19 Hb_003935_020 0.103802624 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002163_050 0.1038839458 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]

Gene co-expression network

sample Hb_003064_020 Hb_003064_020 Hb_008554_060 Hb_008554_060 Hb_003064_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003064_020--Hb_011512_070 Hb_002226_060 Hb_002226_060 Hb_003064_020--Hb_002226_060 Hb_003052_190 Hb_003052_190 Hb_003064_020--Hb_003052_190 Hb_000589_120 Hb_000589_120 Hb_003064_020--Hb_000589_120 Hb_003942_020 Hb_003942_020 Hb_003064_020--Hb_003942_020 Hb_008554_060--Hb_000589_120 Hb_000656_240 Hb_000656_240 Hb_008554_060--Hb_000656_240 Hb_002078_140 Hb_002078_140 Hb_008554_060--Hb_002078_140 Hb_000667_070 Hb_000667_070 Hb_008554_060--Hb_000667_070 Hb_001534_120 Hb_001534_120 Hb_008554_060--Hb_001534_120 Hb_011512_070--Hb_000656_240 Hb_011512_070--Hb_002226_060 Hb_000529_030 Hb_000529_030 Hb_011512_070--Hb_000529_030 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_002226_060--Hb_000656_240 Hb_001341_150 Hb_001341_150 Hb_002226_060--Hb_001341_150 Hb_003018_010 Hb_003018_010 Hb_002226_060--Hb_003018_010 Hb_002226_060--Hb_000529_030 Hb_001279_080 Hb_001279_080 Hb_002226_060--Hb_001279_080 Hb_003582_060 Hb_003582_060 Hb_003052_190--Hb_003582_060 Hb_003304_020 Hb_003304_020 Hb_003052_190--Hb_003304_020 Hb_001245_100 Hb_001245_100 Hb_003052_190--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_003052_190--Hb_001163_050 Hb_003052_190--Hb_000205_090 Hb_000003_230 Hb_000003_230 Hb_003052_190--Hb_000003_230 Hb_000684_380 Hb_000684_380 Hb_000589_120--Hb_000684_380 Hb_014109_040 Hb_014109_040 Hb_000589_120--Hb_014109_040 Hb_007576_080 Hb_007576_080 Hb_000589_120--Hb_007576_080 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_007163_070 Hb_007163_070 Hb_003942_020--Hb_007163_070 Hb_003942_020--Hb_008554_060 Hb_003942_020--Hb_011512_070 Hb_189216_020 Hb_189216_020 Hb_003942_020--Hb_189216_020 Hb_003942_020--Hb_000529_030 Hb_146673_010 Hb_146673_010 Hb_003942_020--Hb_146673_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.2715 42.8612 87.4905 43.9213 64.0148 42.7154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.7414 158.346 55.0829 58.2028 49.7819

CAGE analysis