Hb_003069_010

Information

Type transcription factor
Description TF Family: FAR1
Location Contig3069: 4290-6742
Sequence    

Annotation

kegg
ID rcu:RCOM_1627480
description hypothetical protein
nr
ID XP_012084757.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A067LDF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15098 PE=4 SV=1
Gene Ontology
ID GO:0006355
description far-red impaired responsive family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32396: 386-5645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003069_010 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
2 Hb_005186_050 0.0421182786 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
3 Hb_010661_030 0.0690945584 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
4 Hb_003607_150 0.0717329086 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
5 Hb_012627_050 0.0758344851 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_007154_020 0.079340535 - - -
7 Hb_004531_070 0.0836061865 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
8 Hb_007576_040 0.0869298665 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
9 Hb_028841_030 0.087282598 - - -
10 Hb_003363_110 0.0887272707 - - protein with unknown function [Ricinus communis]
11 Hb_001934_030 0.0893493497 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
12 Hb_001512_060 0.0927870431 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
13 Hb_112798_030 0.0929588358 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002188_130 0.0940231956 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
15 Hb_009421_020 0.0957267799 - - PREDICTED: caltractin-like [Jatropha curcas]
16 Hb_000362_200 0.0958499658 - - exonuclease family protein [Populus trichocarpa]
17 Hb_000251_070 0.0963793802 - - hypothetical protein L484_010641 [Morus notabilis]
18 Hb_002968_060 0.0965139691 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
19 Hb_001662_070 0.1003159258 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
20 Hb_000853_430 0.1017094724 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]

Gene co-expression network

sample Hb_003069_010 Hb_003069_010 Hb_005186_050 Hb_005186_050 Hb_003069_010--Hb_005186_050 Hb_010661_030 Hb_010661_030 Hb_003069_010--Hb_010661_030 Hb_003607_150 Hb_003607_150 Hb_003069_010--Hb_003607_150 Hb_012627_050 Hb_012627_050 Hb_003069_010--Hb_012627_050 Hb_007154_020 Hb_007154_020 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070 Hb_005186_050--Hb_003607_150 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003607_150--Hb_000251_070 Hb_002685_040 Hb_002685_040 Hb_003607_150--Hb_002685_040 Hb_003607_150--Hb_007154_020 Hb_028841_030 Hb_028841_030 Hb_003607_150--Hb_028841_030 Hb_012627_050--Hb_010661_030 Hb_001934_030 Hb_001934_030 Hb_012627_050--Hb_001934_030 Hb_012627_050--Hb_007576_040 Hb_009421_020 Hb_009421_020 Hb_012627_050--Hb_009421_020 Hb_000392_440 Hb_000392_440 Hb_012627_050--Hb_000392_440 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_007154_020--Hb_001512_060 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_004531_070--Hb_005186_050 Hb_004531_070--Hb_028841_030 Hb_011013_010 Hb_011013_010 Hb_004531_070--Hb_011013_010 Hb_013405_060 Hb_013405_060 Hb_004531_070--Hb_013405_060 Hb_004531_070--Hb_003607_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2186 3.31065 10.023 3.53582 9.50058 9.1379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2471 13.4066 8.57104 3.45736 3.81098

CAGE analysis